MmuEX0027867 @ mm10
Exon Skipping
Gene
ENSMUSG00000038696 | Mapkap1
Description
mitogen-activated protein kinase associated protein 1 [Source:MGI Symbol;Acc:MGI:2444554]
Coordinates
chr2:34581192-34619942:+
Coord C1 exon
chr2:34581192-34581332
Coord A exon
chr2:34597423-34597560
Coord C2 exon
chr2:34619845-34619942
Length
138 bp
Sequences
Splice sites
3' ss Seq
CCCCCCCCTTGGCCTTACAGGTA
3' ss Score
11.99
5' ss Seq
CCAGTGAGT
5' ss Score
8.28
Exon sequences
Seq C1 exon
GTTCAAGGGCAGACGGAGTTTTCGAGGAGGATTCACAAATTGACATCGCTACAGTACAGGATATGCTTAGCAGCCACCATTACAAGTCATTCAAAGTCAGCATGATCCACAGACTGCGATTCACGACGGATGTGCAGTTAG
Seq A exon
GTATCTCTGGAGACAAAGTAGAGATAGACCCTGTTACGAATCAGAAAGCCAGCACTAAGTTTTGGATTAAGCAGAAACCCATCTCAATCGATTGTGACCTGCTCTGTGCCTGTGACCTTGCCGAGGAGAAGAGCCCCA
Seq C2 exon
GTCACGCGGTGTTTAAGCTCACGTATCTAAGCAGCCATGACTACAAGCACCTGTACTTCGAGTCCGACGCAGCCACAGTCAGTGAGATCGTGCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038696_MULTIEX2-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.010 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF054227=SIN1=PD(1.3=8.3),PF054227=SIN1=FE(36.7=100)
A:
PF054227=SIN1=FE(15.9=100)
C2:
PF054227=SIN1=FE(11.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCAAGGGCAGACGGAG
R:
GCACGATCTCACTGACTGTGG
Band lengths:
234-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types