RnoEX0052621 @ rn6
Exon Skipping
Gene
ENSRNOG00000017583 | Mapkap1
Description
mitogen-activated protein kinase associated protein 1 [Source:RGD Symbol;Acc:1305363]
Coordinates
chr3:13662240-13696846:+
Coord C1 exon
chr3:13662240-13662380
Coord A exon
chr3:13676169-13676306
Coord C2 exon
chr3:13696749-13696846
Length
138 bp
Sequences
Splice sites
3' ss Seq
CTGCCCCTTTGGCCTTACAGGTA
3' ss Score
11.53
5' ss Seq
CCAGTGAGT
5' ss Score
8.28
Exon sequences
Seq C1 exon
GTTCAAGGGCAGACGGAGTTTTCGAGGAGGATTCACAAATTGACATTGCTACAGTGCAGGATATGCTTAGCAGCCACCATTATAAGTCATTCAAAGTCAGCATGATCCACAGACTGCGGTTCACAACTGACGTGCAGTTAG
Seq A exon
GTATCTCTGGAGACAAAGTGGAGATAGACCCTGTTACGAATCAGAAAGCCAGCACTAAGTTTTGGATTAAGCAGAAGCCCATCTCAATCGATTGTGACCTGCTCTGTGCCTGTGACCTTGCCGAGGAGAAGAGCCCCA
Seq C2 exon
GTCACGCGGTCTTTAAGCTCACGTATCTAAGCAGTCACGACTATAAGCATCTCTACTTCGAGTCCGACGCAGCTACCGTCAGTGAAATCGTGCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017583_MULTIEX2-3/3=2-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF054227=SIN1=FE(10.1=100)
A:
PF054227=SIN1=FE(9.9=100)
C2:
PF054227=SIN1=FE(6.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCAAGGGCAGACGGAG
R:
GAGCACGATTTCACTGACGGT
Band lengths:
236-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]