DreEX0044956 @ danRer10
Exon Skipping
Gene
ENSDARG00000091777 | mapkap1
Description
mitogen-activated protein kinase associated protein 1 [Source:ZFIN;Acc:ZDB-GENE-041111-178]
Coordinates
chr5:4993830-5006046:+
Coord C1 exon
chr5:4993830-4993970
Coord A exon
chr5:5002358-5002495
Coord C2 exon
chr5:5005949-5006046
Length
138 bp
Sequences
Splice sites
3' ss Seq
AACCTGGACAATTTTTGCAGGAA
3' ss Score
4.11
5' ss Seq
CAAGTCAGT
5' ss Score
2.74
Exon sequences
Seq C1 exon
GCTCTCGAGGCGAGGAGAGCTCAGAGGAGGATCCACCTATAGACATCACTACTGTGCAGGACATGTTGAGCAGTCACCACTACAAGTCCTTCAAGATCAGCATGATCCACAAGCTCCGCTTCACCACAGACGTGCAGCTAG
Seq A exon
GAATTTCTGGAGAAAAGGTGGAGATCGACCCTGTGACCAACCAGAAAACAAGTACCAAGTTCTGGATCCGCCAGAAGCCCATTTCCATCGACTCGGACCTGCTGTGTGCCTGCGACCTGGTGGAGGAGAAGAGTCCAA
Seq C2 exon
ATCATGCAATATTTAAACTCACATATCTCAGCAACCACGACTACAAAGCTCTGTACTTCGAGTGTGACGCTGCTACCGTCAATGAGATTGTGCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000091777_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.333 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF054227=SIN1=FE(10.0=100)
A:
PF054227=SIN1=FE(9.8=100)
C2:
PF054227=SIN1=FE(6.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGAGGCGAGGAGAGCTCA
R:
TTGAGCACAATCTCATTGACGGT
Band lengths:
234-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]