GgaEX0000992 @ galGal3
Exon Skipping
Gene
ENSGALG00000000977 | SIN1_CHICK
Description
NA
Coordinates
chr17:10365408-10379261:-
Coord C1 exon
chr17:10379121-10379261
Coord A exon
chr17:10374204-10374341
Coord C2 exon
chr17:10365408-10365505
Length
138 bp
Sequences
Splice sites
3' ss Seq
TCTATTCTTTCTCATCTCAGGTA
3' ss Score
9.42
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
Exon sequences
Seq C1 exon
GTTCGAGAGGAGAGGAGATCTCAGAGGAGGACCCTCAGATCGACATCGCCACGGTGCAGGACATGCTCAGCAGCCACCACTACAAGTCCTTCAAAGTCAGCATGATCCATAGGCTTCGATTCACCACTGATGTTCAGTTAG
Seq A exon
GTATTTCTGGAGACAAGGTAGAGATAGACCCTGTTACTAATCAGAAGGCCAGCACTAAGTTTTGGATTAAGCAGAAACCCATTTCAATCGATTCTGAACTCCTCTGTGCCTGTGACCTTGTGGAAGAAAAGAGCCCAA
Seq C2 exon
GTCATGCAATATTTAAACTTACATATCTAAGCAATCACGACTACAAACACCTGTACTTCGAATCAGATGCTGCTACTGTCAATGAAATTGTACTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000977_CASSETTE1
Average complexity
S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.174 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF054227=SIN1=FE(10.1=100)
A:
PF054227=SIN1=FE(9.9=100)
C2:
PF054227=SIN1=FE(6.9=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCGAGAGGAGAGGAGATCT
R:
GTACAATTTCATTGACAGTAGCAGCA
Band lengths:
234-372
Functional annotations
There are 0 annotated functions for this event