BtaEX0021574 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018313 | MBNL2
Description
Bos taurus muscleblind-like 2 (Drosophila) (MBNL2), mRNA. [Source:RefSeq mRNA;Acc:NM_001099710]
Coordinates
chr12:78409734-78445751:+
Coord C1 exon
chr12:78409734-78409887
Coord A exon
chr12:78417448-78417483
Coord C2 exon
chr12:78444069-78445751
Length
36 bp
Sequences
Splice sites
3' ss Seq
TACCATTGCATGACACGCAGGGT
3' ss Score
3.09
5' ss Seq
TTGGTAGGT
5' ss Score
7.03
Exon sequences
Seq C1 exon
GCCTTCCCTCCTGGTGCTCTTCATCCTTTACCAAAGAGACAAGCACTTGAAAAAAGCAACGGTGCGAGCACCGTGTTTAACCCCAGCGTCTTGCAGTACCAGCAGGCTCTCACCAGTGCGCAGCTGCAGCAGCACACCGCGTTCATCCCGACAG
Seq A exon
GGTCAGTTTTGTGCATGACACCCGCTACCAGTATTG
Seq C2 exon
ATAATTCTGAAATAATCAGCAGGAACGGAATGGAATGCCAAGAATCTGCATTGAGAATAACTAAACATTGTTACTGTACATACTATCCTGTTCCCTCCTCAATAGAATTGCCACAAACTGCATGCTAAATAAAGATTTAGTTCTTCTGGACAGACCACAACTCTAAGAAGCTAGTGCTGCTATATCATATATGAGTATTAAATATGGTATGCTTAGTATATTCCAACCTAAGATAGTTAACTACCTGAGACCAGCTGTGATGTTAAAGGACATAAAGGATAAAGTTTACTTTTAAAGGGTTTCTAAACATAGTTTCTGTCCTAGGAATATTGTCTTCTCTCCATAACTATAGCTGATGCAGAAAGTCCAACCAATTTATTCATTTCGACTCAGAATATTTCAAAGTTAGCAATAAACAATTAGCATTAGTTAAAAAAAAAAGAAAAAGAAAGAAAGAAAAAAAACCTATTCCAGGGGCAGGTTCAATTCTAACTTCAATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018313_MULTIEX2-1/3=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (disopred):
C1=0.159 A=0.692 C2=0.300
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSBTAT00000030532fB4135
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTGTTTAACCCCAGCGTCTT
R:
TGGCATTCCATTCCGTTCCTG
Band lengths:
123-159
Functional annotations
There are 1 annotated functions for this event
PMID: 21454535
Inferred from MBNL1 ortholog: The exon 7 region enhances MBNL1-MBNL1 dimerization properties
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development