BtaEX0021706 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011032 | MCPH1
Description
Bos taurus microcephalin 1 (MCPH1), mRNA. [Source:RefSeq mRNA;Acc:NM_001103315]
Coordinates
chr27:4357152-4420562:+
Coord C1 exon
chr27:4357152-4357261
Coord A exon
chr27:4384931-4384968
Coord C2 exon
chr27:4420485-4420562
Length
38 bp
Sequences
Splice sites
3' ss Seq
TTCTCTTTTGACATCCCTAGCCA
3' ss Score
6.88
5' ss Seq
TGAGTAAGT
5' ss Score
8.82
Exon sequences
Seq C1 exon
GTGTGAAAAGTGGACCAACAAGGCACAGTGTTGTGGCCAGCTCACGGAAAGGCTGCCAGGACCTCCTCAGACTGCGGGAGGAATCCGGGAAGAAGGGCAGAGGCCAGGAG
Seq A exon
CCAACAAGAACATTAGTCATGACAAGCATGCCATCTGA
Seq C2 exon
GTACTGTGGTCTTTGGAAATGGGTCACTGGATTTCCGAGGAACCATTTGAACTGTCTAACTACTTCCCTGCAGCTCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011032_MULTIEX2-5/8=4-7
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.811 A=0.615 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0053321=BRCT=PU(9.1=46.2)
C2:
PF0053321=BRCT=PD(6.1=15.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGGAATCCGGGAAGAAGGG
R:
AGGAGCTGCAGGGAAGTAGTT
Band lengths:
112-150
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development