GgaEX7003309 @ galGal4
Exon Skipping
Gene
ENSGALG00000016332 | MCPH1
Description
microcephalin [Source:RefSeq peptide;Acc:NP_001098789]
Coordinates
chr3:88055997-88067645:-
Coord C1 exon
chr3:88067542-88067645
Coord A exon
chr3:88059025-88059062
Coord C2 exon
chr3:88055997-88056159
Length
38 bp
Sequences
Splice sites
3' ss Seq
TGTTTGCTTCATTTTTTTAGCCA
3' ss Score
6.52
5' ss Seq
TGAGTAAGT
5' ss Score
8.82
Exon sequences
Seq C1 exon
GTGATGAAAATCACGTGTCAGAGTATGATGGCTCTTGCAAAGTTTTTAAGGAGCAAAAAAATAAGCGCAACGGGAATGTAAGAAAAGCAAGAAGACTCCAGAAG
Seq A exon
CCAACAAGGACACTAGTCATGACCAGTATGTCTTCTGA
Seq C2 exon
GAAACAAAGTATGGTAATTCAGGTGGTGAATAAACTTGGAGACTTCTTGTTCTCAGATGATGTATGTGAAACAACAAGTCATGTAGTTACAGGGAGTCCTCGTCGTACCTTGAATGTTATGCTGGGAATTGCTCGTGGGTGTTGGATTGTTTCTTATGAATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016332-'14-14,'14-13,15-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.371 A=0.385 C2=0.000
Domain overlap (PFAM):
C1:
PF0053321=BRCT=PU(24.0=65.7)
A:
PF0053321=BRCT=FE(12.5=100)
C2:
PF0053321=BRCT=FE(56.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAAAGCAAGAAGACTCCAGAAG
R:
CGACGAGGACTCCCTGTAACT
Band lengths:
128-166
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]