DreEX0045568 @ danRer10
Exon Skipping
Gene
ENSDARG00000058372 | mcph1
Description
microcephalin 1 [Source:ZFIN;Acc:ZDB-GENE-060421-6122]
Coordinates
chr13:6181274-6188276:-
Coord C1 exon
chr13:6188179-6188276
Coord A exon
chr13:6183497-6183534
Coord C2 exon
chr13:6181274-6181436
Length
38 bp
Sequences
Splice sites
3' ss Seq
CTCTCTCTTTGTCTTTGCAGAAA
3' ss Score
12.27
5' ss Seq
TGAGTGAGT
5' ss Score
6.51
Exon sequences
Seq C1 exon
TTGTAGGGAAAGAAAATAAAAGCACAACAGATGGGATTGAGAGAAGTTCTGAAATGTGTAGCAAAGTGGAGAATATGAAAAAGGACAAATGCTTGAAG
Seq A exon
AAAAACAGAACCTTGGTAATGACAAGCATGCCTACTGA
Seq C2 exon
AAAACAGGAGGTAGTCTTCAAGGTGATCAGAAATCTGGGTGGTTTTACTGTGGTGGATGATGTGTGTGAGAGCACCTCTCATGTGGTGTCTGGCAGCCCACGGCGGACTGTTAATATCTTGTTAGGCATCGCACGGGGATGCTGGATCCTCTCCTTTGAATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000058372_MULTIEX1-1/2=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.606 A=0.359 C2=0.000
Domain overlap (PFAM):
C1:
PF0053321=BRCT=PU(1.4=3.0)
A:
PF0053321=BRCT=FE(16.2=100)
C2:
PF0053321=BRCT=FE(73.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCACAACAGATGGGATTGAGA
R:
ACCACCCAGATTTCTGATCACC
Band lengths:
121-159
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]