RnoEX6056040 @ rn6
Exon Skipping
Gene
ENSRNOG00000028586 | Mcph1
Description
microcephalin 1 [Source:RGD Symbol;Acc:1560642]
Coordinates
chr16:76045442-76070467:-
Coord C1 exon
chr16:76070367-76070467
Coord A exon
chr16:76047738-76047775
Coord C2 exon
chr16:76045442-76045604
Length
38 bp
Sequences
Splice sites
3' ss Seq
TTCTCTTTTGAAATCTCTAGCCA
3' ss Score
5.64
5' ss Seq
TGAGTAAGT
5' ss Score
8.82
Exon sequences
Seq C1 exon
GTGTTAAAAATGGACTAGGGAGGCCAGATCCTTCAGACAGCTCGTACAGAGGCCTTGTCAGACCTCAAGAGAAACCGAAGAATTCTGGGAAAGAAAAAGAG
Seq A exon
CCAACGAGAACATTAGTCATGACAAGCATGCCGTCTGA
Seq C2 exon
GCAGCAGGACCTCATCATCCAGGTGGTGAGCACACTGAGAGGCTTTTCATTCGCCCCTGAGGTCTGCGAGTCCACCACCCACGTGCTGGTGGGGAAGTCTGTCCGTACCCTGAACGTGCTGATGGGGATTGCACGAGGTTGCTGGATTCTTTCTTACCAATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000028586-'13-11,'13-10,14-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.846 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0053321=BRCT=PU(11.8=61.5)
C2:
PF0053321=BRCT=FE(79.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGGCCAGATCCTTCAGACA
R:
GTGCTCACCACCTGGATGATG
Band lengths:
116-154
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]