BtaEX0022243 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000024482 | MGC157043
Description
MGC157043 protein; Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:A7YY30]
Coordinates
chr16:57676527-57682376:+
Coord C1 exon
chr16:57676527-57676598
Coord A exon
chr16:57680315-57680512
Coord C2 exon
chr16:57681826-57682376
Length
198 bp
Sequences
Splice sites
3' ss Seq
ATCTCTTTTGGGTATTTCAGGGT
3' ss Score
8.14
5' ss Seq
CAGGTTGGT
5' ss Score
8.08
Exon sequences
Seq C1 exon
ATCTGTTCCCAGTTGAGTACCCGACTGGAGAAACAGCAAGCAGCCAGCAAGGAGGAGCTGGAAGTGGTAAAG
Seq A exon
GGTAAAATGATGGCATGTAAACACTGCAGTGACATTTTCAGCAAGGAGGGTGCTTTGAAAGCAGCGGCCGTAAGCAGAGAGGACCAGGGCATTGAATCGGATGATGAGAAGGACTCTCTTAAGAAGCAACTGAGGGAGATGGAGCTGGAATTGGCACAAACCAAACTGCAGCTGGTGGAGGCCAAGTGTAAAATCCAG
Seq C2 exon
GAACTTGAACATCAGAGAGGAGCCCTTATGAATGAAATCCAAGCTGCAAAAAACTCTTGGTTTAGCAAAACCCTGAACTCTATCAAAACGGCCACGGGCACGCAGCCGCTGCAGCCGCCACAGGCCACCCAGCCCCCCAAGGAGAGCACATAGTTCCAGCCTCACCCGAACACAGGAGCACAACGATCAAAGCGACGGAAACCCAGGAAGAGTCCTGGTGTCCCTTTGAAAGGAAGGGAGGGAGGCCAGAAAGCAAGCCAGGATCTTTCAGTAGCTCTCAATCTTTCTCGTATGACACTTTTCAAAGGGATGTTATTTAAACTAACCTGATTTATGTTGAATACCTGTGTTCGTGCTTCATAGAAGTCCGTGTTCCGATCCATCATAGTATTATTACACATTATTTTATATGCCTGATATCTGGTTGGAAACAAGTAATTCAGAGCTAAATGCTTTTTATTTAGAATTATTCATAATTATTTTTATCTTACATGAAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000024482_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.333 C2=0.540
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACCCGACTGGAGAAACAGCA
R:
TTCCGTCGCTTTGATCGTTGT
Band lengths:
255-453
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development