DreEX6028040 @ danRer10
Exon Skipping
Gene
ENSDARG00000060315 | rabgap1l2
Description
RAB GTPase activating protein 1-like 2 [Source:ZFIN;Acc:ZDB-GENE-070912-414]
Coordinates
chr2:36920522-36922738:+
Coord C1 exon
chr2:36920522-36920593
Coord A exon
chr2:36920677-36920868
Coord C2 exon
chr2:36921950-36922738
Length
192 bp
Sequences
Splice sites
3' ss Seq
GATGTGTGTTATTATTTTAGAGT
3' ss Score
8.57
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
ATTTGCTCACAGCTGAACACTAAACTTGAAAACCAGAAAGAAGAAGCAGACAAGAATCTCGCTTTTATCAAG
Seq A exon
AGTAAGCTCCAGGAGTGTGAGAGGTGCAGTCGCATCTTCAGTGTGGATGGGTCGATTGAAAGCTGCTCCGAGAGTGAAGACAGATCTGCTCAGGATGAAGCAAAGACCTCTCTCAGAGAACAGGTCAAAGAGCTAGAGAAAGAGCTGGCACAAACAAAGCTACAGATGGTGGAGTCCAAATGTAAAATCCAG
Seq C2 exon
GAGCTGGAGCACCAAAAAGCAGTTCTGATGACTGAACTTCAAGCTGCTAAAAACACATGGCTCAAAAAAACCCTGGACTCATTCAAGACAGCTGCCAGCGGCCAACAGAGCTCCTCACAGACTGATTCTGCCTGGAGCCCCAATAATAACCCCCAGTCCAGCTGGGTCACCAGACGGTTCTCCTGGGCCCATCGAGAAGCAAGAGCAACCAAAGTATGAAATGGAGAAGTGCGTAGCGTCTAATCGTGGAGAAGAATTTAATGAGAGCACTCGTAATGAGAACACCAACGTTACGCTCTCAGACCAGAGGACATTGCAAATCTTGTAAACACTGGGAATGAAAAGATTTTCAAAACGTCTGCATTTTCGGGGATCGATGCGATGAATACGGTTCTTTTAAAGCACCCTAACACATAGAGACTACCTAAAGTTTTCTAGTGATGTTTTTGGGAAACCAGGTAACGTTATGTGTAAATGGGACGTGTTCCAGTAGTTCACAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000060315-'9-8,'9-6,10-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.328 C2=0.389
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAGCAGACAAGAATCTCGCT
R:
TTGGTTGCTCTTGCTTCTCGA
Band lengths:
243-435
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]