MmuEX6028620 @ mm9
Exon Skipping
Gene
ENSMUSG00000026721 | Rabgap1l
Description
RAB GTPase activating protein 1-like [Source:MGI Symbol;Acc:MGI:1352507]
Coordinates
chr1:162149305-162161998:-
Coord C1 exon
chr1:162161927-162161998
Coord A exon
chr1:162156616-162156813
Coord C2 exon
chr1:162149305-162154499
Length
198 bp
Sequences
Splice sites
3' ss Seq
GTCTCTTTCGTGTGTTTCAGGGT
3' ss Score
12.93
5' ss Seq
CAGGTTGGT
5' ss Score
8.08
Exon sequences
Seq C1 exon
ATATGTTCTCAATTAAGTACCAGGCTGGAGAAACAGCAAGCAGCCAGCAAGGAGGAGCTAGAAGCAGTAAAG
Seq A exon
GGTAAGATGATGGCATGCAAACACTGCAGTGATATCTTCAGCAAGGAAGGAGCTTTAAAGCCAGTGGCCGTAAATAGAGAGGACCAGGGACTTGAAGCAGATGATGAAAAGGACTCACTTAAGAAGCAGCTGAGGGAGATGGAACTGGAACTGGCACAGACCAAACTGCAGCTGGTGGAAGCCAAGTGCAAAATCCAG
Seq C2 exon
GAACTTGAGCATCAGAGAGGAGCGCTTATGAATGAAATACAAGCTGCAAAAAACTCTTGGTTTAGTAAAACCCTGAACTCTATCAAAACAGCCACAGGCACTCAGCCACTACAGCCGCCACAGGCTCCCCAGCCACCCAAGGAGAGCACATAGTTCCAGCCTCAGCCAAGCACAAGAGCACAATGATCAAAACATCAGAAACCAAGAATTTTTCCTGTTGTCCCTTTGAAGAAACTAAAGGAGACCAGAAAGCAAGTTAGACTCTTTTCAGTAGCTCTGTCTTTGATGGATGACATTTTTTCAGAGGGATGTTATTTAAACTGACCTGGTTTATGTTGAATATCTATTTCCCAGCTTCTTCATGGAAAACCACATTCAGCTCCATCATATTACACATTGTGTTTTATATGCCTGAAATTTAGTTGGAAATGAGTAATCTAAAACTAAATGCTTTTGTTTAGAATTAACTATTCATAATAAATTTTATCTTACATAAAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026721-'37-40,'37-38,38-40=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.125 A=0.348 C2=0.580
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTACCAGGCTGGAGAAACAG
R:
CATTGTGCTCTTGTGCTTGGC
Band lengths:
242-440
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: