DreEX6098561 @ danRer10
Exon Skipping
Gene
ENSDARG00000061757 | rabgap1l
Description
RAB GTPase activating protein 1-like [Source:ZFIN;Acc:ZDB-GENE-050208-389]
Coordinates
chr22:17424910-17427924:+
Coord C1 exon
chr22:17424910-17424981
Coord A exon
chr22:17425069-17425266
Coord C2 exon
chr22:17427592-17427924
Length
198 bp
Sequences
Splice sites
3' ss Seq
GCATGGGTTTTTTCTTCCAGGCT
3' ss Score
8.13
5' ss Seq
CAGGTCAGA
5' ss Score
7.41
Exon sequences
Seq C1 exon
ATATGTTCCCAGTTGAGCACGCGGCTAGAGAAACAGCAGGCTTCCACAAAAGAGGAACTGGACATTGTGAAG
Seq A exon
GCTAAAGTGATGGCATGTGAGCGCTGCAGGGAAGTGTTTAGTAAAGATGGACCACTGCAGATCCCGCCGGTCAGTCAGGACAACCGGGACACAGACCTGGACGAGGAGAAAGACTCGCTCAAAGCCCAACTCCGAGAGCTGGAACTGGAGCTGGCGCAAACCAAACTGCAGCTTGTGGAGGCCAAGTGCAAGATCCAG
Seq C2 exon
GAGCTGGAGCATCAGCGGGGCGTATTGATGACGGAGGTCCAAGCTGCCAAAAACTCATGGTTCAGTAAAACGCTGGGCTCCCTCAAGAACTCAGCCAGTAACCAGTCACCCTCCTCACCCAAAGAGGGCCCGTAGGACTCGCCAAGTGCTTAACCAAAGGGTGGAGGAGTGTGACTTTCAGAGCGTTAACGAACACTACTAGAAACACAACAACAGCAGTGCAGTATTCCCTCATATGGACTAATGAACCAACCTCTCATCCACATGCACTTAATGGTCTGTTATTATTTCCTGAGCTTGCGACGCCACCTTGTGGATAGTAGCAGTACTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061757-'28-39,'28-37,29-39=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.364 C2=0.432
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TATGTTCCCAGTTGAGCACGC
R:
ACACTCCTCCACCCTTTGGTT
Band lengths:
243-441
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]