BtaEX6046017 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000039172 | RABGAP1
Description
RAB GTPase activating protein 1 [Source:HGNC Symbol;Acc:HGNC:17155]
Coordinates
chr11:94259269-94264248:+
Coord C1 exon
chr11:94259269-94259340
Coord A exon
chr11:94260990-94261187
Coord C2 exon
chr11:94262508-94264248
Length
198 bp
Sequences
Splice sites
3' ss Seq
CATCTCACCTTCAATTTCAGCAA
3' ss Score
7.45
5' ss Seq
CAGGTAACA
5' ss Score
8.88
Exon sequences
Seq C1 exon
ATTTGCTCTCAGTTGAGTGAAAGATTGGAGAAGCAGCAGGCTGCTAATAAAGTGGAGATTGAGAAAATTCGG
Seq A exon
CAAAAAGTAGATGACTGTGAACGCTGCCGGGAATTTTTCAACAAAGAAGGGCGCATAAAGGGCATGGGCTCAGCTAAGGAAGTTGTGGATGAGGATACAGATGAGGAGAAGGAAACACTCAAGAACCAGCTGAGAGAGATGGAGCTGGAACTGGCACAGACCAAGCTGCAGCTGGTGGAAGCGGAGTGTAAGATCCAG
Seq C2 exon
GACTTGGAGCACCATTTAGGCCTTGCCCTCAACGAGGTCCAGGCAGCCAAGAAGACGTGGTTTAACCGAACACTGAGCTCCATAAAGACAGCAACTGGGGTTCAAGGGAAAGAGACTTGCTGAGAGCAGCTGCTGCCTCCAGACCCTTCGGAAAACATGACACCTTTTGTTGCCTTCTTTGGCCAGATGTGTGATTCTGTGACATGCCCCAGGACAGAATGTCCGCAAGTCAGATCCATAGAAGCCTGTCGGGAGGTCACTGTGGACCAGAGCTCGTGAGGCCCTCCTCACTGCTGATACTAACAGGCCCGCTGACTCGCCTGCCGCTCTGGACACTCCGAACGTCACTCCTCCATGTGACCTCCGGCCTCTTCCCAGTTAGGTCAGCTCATATCCAGCCCAGCATCCGAGTTGACGTTATCAGAGTTTGGGGATCTTCAGGCTGTTGGTTTTTTTCTAAACCTTTAATTTTTTTTTAAAATACACACACACATACAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000039172-'47-47,'47-46,49-47=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.333 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AAGATTGGAGAAGCAGCAGGC
R:
CACAGAATCACACATCTGGCCA
Band lengths:
253-451
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]