MmuEX6100910 @ mm9
Exon Skipping
Gene
ENSMUSG00000035437 | Rabgap1
Description
RAB GTPase activating protein 1 [Source:MGI Symbol;Acc:MGI:2385139]
Coordinates
chr2:37417412-37421957:+
Coord C1 exon
chr2:37417412-37417483
Coord A exon
chr2:37418956-37419153
Coord C2 exon
chr2:37420285-37421957
Length
198 bp
Sequences
Splice sites
3' ss Seq
ACTTCTGGTGTTCACTTCAGCAA
3' ss Score
6.77
5' ss Seq
CAGGTAATA
5' ss Score
8.55
Exon sequences
Seq C1 exon
ATTTGTTCTCAATTGAGTGAAAGACTGGAAAAGCAACAGACAGCCAATAAAGTGGAAATTGAGAAAATCCGG
Seq A exon
CAAAAGGTAGATGACTGTGACCGCTGCCGAGACTTCTTCAACAAAGAAGGGCGAGTGAAGGGTATCAGCTCAGCCAAGGGAGTTTCAGATGAGGACACAGATGAAGAAAAAGAGACACTCAAGAACCAGCTTCGGGAGATGGAGCTAGAGCTGGCACAAACCAAACTGCAGCTGGTAGAAGCTGAATGCAAGATCCAG
Seq C2 exon
GACTTGGAACACCACTTGGGCCTTGCCCTCAGTGAGGTGCAGGCAGCCAAGAAGACCTGGTTTAACCGAACACTGAGCTCCATAAAGACAGCAACTGGTGTTCAAGGGAAAGAGACATGTTGAGAACAGCTGCTGCCTCCAGACACCTCCAGAAAACACACCACCTTTTGTTGCCTTCTTTGGCCAGATGTGTGATTCTGTGATATGTTGCAGGACCAGAATGAACCTAGGTCAGAGCTGTATAGTATATTGTTAGGTCAGTGGGCTAGGGCTCCTGCAGCAGGCTGCCAACCCAACTGATGCTTTGGGTATGCACCAGAGTCCTTCCTCCTAGTGCCATTCAGGCCTCTTTTCTGTATAGGAAGGAACACTTCACACAGCCAGACTTGGGGAATACCCCAATGTATTGGGTTTTCTTTTTCTAAACCCTTTAAAAAAATTGTGTGTGTGTGTGTGTATGTGTACACATATACACACATGCACACACTCTATCCTTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035437-'35-39,'35-38,36-39=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.042 A=0.348 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAAAAGCAACAGACAGCCA
R:
CACAGAATCACACATCTGGCCA
Band lengths:
249-447
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: