GgaEX1047826 @ galGal4
Exon Skipping
Gene
ENSGALG00000001225 | RABGAP1
Description
RAB GTPase activating protein 1 [Source:HGNC Symbol;Acc:HGNC:17155]
Coordinates
chr17:8876029-8878186:+
Coord C1 exon
chr17:8876029-8876100
Coord A exon
chr17:8876606-8876803
Coord C2 exon
chr17:8877615-8878186
Length
198 bp
Sequences
Splice sites
3' ss Seq
CAATCAGGTATTTACTTTAGCAA
3' ss Score
2.14
5' ss Seq
CAGGTAATG
5' ss Score
9.43
Exon sequences
Seq C1 exon
ATTTGTTCCCAGCTGAGTGAGCGACTGGAAAAGCAACAAACAGCAAATAAAGCTGAAATTGAGAAAATACGG
Seq A exon
CAAAAAGTGGATGACTGTGAACACTGTCGGGAGTTCTTCAATAAAGAAGGCCATGTGAAGGTTGCAAGCTCAGCCAAGGATGGTTCAGATGATGACACAGATGAGGAGAAGGAAACACTGAAAAACCAGCTGAGGGAGATGGAACTTGAGCTGGCCCAGACCAAACTGCAGCTTGTGGAAGCAGAATGTAAAATACAG
Seq C2 exon
GATTTGGAACACCATTTGGGTCTGGCATTGAATGAAGTACAAGCTGCAAAGAAAACATGGTTCAACAGAACAATAAGCTCTATAAAAACAGTGACTGGAGTCCAAGGAAAAGAGACTTGTTGAAATGCAGTTCTGTCAAACACACCTTCTTAACACAACACCTTTTGTTGCCTTCCTTGGCCAGATCTTTAATTCTGTGACATGAGAGGACCAGAATGTAAATACAATAGAAATACAGCATGTTGGGATTTCAATAGGTCAGTGATAAAAAGGATGGAAACACAAAAATGGCTTTATTGCTAGACATGGGATCTTCATACTACTGATATGTAACAGGTGATGTAGCTAGATTGAAGCTCTTCAGAGAAACACTCCATTCTGCGGTCTGGCTGGAGGCTTTTCACAGACTAGGTACGAGAACTTACCAAACCCTAATTGTTAAGTTTACATACGATAGGTTTTTTTACAGTTATAACCTTTTTTAATATTTTATTTGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001225-'36-50,'36-47,37-50
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.208 A=0.354 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTGAGCGACTGGAAAAGCA
R:
TAAAGATCTGGCCAAGGAAGG
Band lengths:
249-447
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]