HsaEX6062906 @ hg38
Exon Skipping
Gene
ENSG00000011454 | RABGAP1
Description
RAB GTPase activating protein 1 [Source:HGNC Symbol;Acc:HGNC:17155]
Coordinates
chr9:123099478-123103268:+
Coord C1 exon
chr9:123099478-123099549
Coord A exon
chr9:123101566-123101763
Coord C2 exon
chr9:123103091-123103268
Length
198 bp
Sequences
Splice sites
3' ss Seq
CATCTAACATTCAATTTCAGCAA
3' ss Score
6.43
5' ss Seq
CAGGTAACA
5' ss Score
8.88
Exon sequences
Seq C1 exon
ATTTGTTCTCAGTTGAGTGAAAGATTGGAGAAGCAGCAGACAGCCAATAAGGTGGAAATTGAGAAAATTCGG
Seq A exon
CAAAAAGTGGATGACTGTGAGCGGTGCCGGGAATTTTTCAACAAAGAAGGGCGTGTAAAAGGCATAAGCTCAACCAAGGAGGTTTTAGATGAGGACACGGATGAAGAGAAAGAGACGCTCAAGAACCAGCTGAGAGAAATGGAGCTAGAACTGGCACAGACCAAACTCCAGCTGGTGGAGGCCGAGTGTAAGATACAG
Seq C2 exon
GACTTGGAACACCATTTAGGGCTTGCCCTCAATGAGGTGCAGGCAGCCAAGAAGACGTGGTTTAACCGAACACTGAGCTCCATAAAGACAGCAACCGGGGTTCAAGGGAAAGAGACTTGCTGAGAGCAGCTGCCGCCTCCCGACACCTTCAGAAAACACGACACCTTTTGTTGCCTTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000011454-'92-96,'92-95,95-96
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.318 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCAGTTGAGTGAAAGATTGGAGA
R:
AGGCAACAAAAGGTGTCGTGT
Band lengths:
242-440
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains