GgaEX1047826 @ galGal3
Exon Skipping
Gene
ENSGALG00000001225 | RABGAP1
Description
NA
Coordinates
chr17:9587237-9589344:+
Coord C1 exon
chr17:9587237-9587308
Coord A exon
chr17:9587814-9588011
Coord C2 exon
chr17:9588823-9589344
Length
198 bp
Sequences
Splice sites
3' ss Seq
CAATCAGGTATTTACTTTAGCAA
3' ss Score
2.14
5' ss Seq
CAGGTAATG
5' ss Score
9.43
Exon sequences
Seq C1 exon
ATTTGTTCCCAGCTGAGTGAGCGACTGGAAAAGCAACAAACAGCAAATAAAGCTGAAATTGAGAAAATACGG
Seq A exon
CAAAAAGTGGATGACTGTGAACACTGTCGGGAGTTCTTCAATAAAGAAGGCCATGTGAAGGTTGCAAGCTCAGCCAAGGATGGTTCAGATGATGACACAGATGAGGAGAAGGAAACACTGAAAAACCAGCTGAGGGAGATGGAACTTGAGCTGGCCCAGACCAAACTGCAGCTTGTGGAAGCAGAATGTAAAATACAG
Seq C2 exon
GATTTGGAACACCATTTGGGTCTGGCATTGAATGAAGTACAAGCTGCAAAGAAAACATGGTTCAACAGAACAATAAGCTCTATAAAAACAGTGACTGGAGTCCAAGGAAAAGAGACTTGTTGAAATGCAGTTCTGTCAAACACACCTTCTTAACACAACACCTTTTGTTGCCTTCCTTGGCCAGATCTTTAATTCTGTGACATGAGAGGACCAGAATGTAAATACAATAGAAATACAGCATGTTGGGATTTCAATAGGTCAGTGATAAAAAGGATGGAAACACAAAAATGGCTTTATTGCTAGACATGGGATCTTCATACTACTGATATGTAACAGGTGATGTAGCTAGATTGAAGCTCTTCAGAGAAACACTCCATTCTGCGGTCTGGCTGGAGGCTTTTCACAGACTAGGTACGAGAACTTACCAAACCCTAATTGTTAAGTTTACATACGATAGGTTTTTTTACAGTTATAACCTTTTTTAATATTTTATTTGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001225-'28-35,'28-34,29-35=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.292 A=0.379 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTGAGCGACTGGAAAAGCA
R:
TAAAGATCTGGCCAAGGAAGG
Band lengths:
249-447
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]