Special

DreEX6087124 @ danRer10

Exon Skipping

Gene
Description
RAB GTPase activating protein 1 [Source:HGNC Symbol;Acc:HGNC:17155]
Coordinates
chr10:8704645-8711459:-
Coord C1 exon
chr10:8711388-8711459
Coord A exon
chr10:8709221-8709418
Coord C2 exon
chr10:8704645-8705699
Length
198 bp
Sequences
Splice sites
3' ss Seq
GTGTGTGTGTGTGCGCGCAGATG
3' ss Score
9.83
5' ss Seq
CAGGTACTG
5' ss Score
9.04
Exon sequences
Seq C1 exon
ATCTGCTCTCAGCTCAGCGAGCGACTGGAGAAACAGCAGACGGCCAACAGAGGAGAACTAGAGAAGATTCGG
Seq A exon
ATGAAGGTGGAGGGCTGTGAGAAGTGCAGTAATCTCTTCAGTAAGGAGGGCCGTCTGAAGGTGCTCAGTGCTCCAAAGGAGGGCAGCGAGGAGGACACAGACGAGGAGAAGGAAGCGCTGAAGAACCAGCTGAGAGAGATGGAGCTGGAGCTCGCACAGACCAAACTACAGCTGGTGGAGGCAGAGTGCAAGATTCAG
Seq C2 exon
GATCTGGAGCATCATCTGGGTCTCGCTCTGAATGAAGTCCAAGCGGCCAAAAAGACGTGGTTCAACAGGACATTAAGCTCCATCAAGACTGTGACAGGAGCTCAAGGCAAAGAGAGCGTGTAACCGAACCACACACTTCCATAAACAAACAAAACAAAACACTCCAGCTCCCCATCATCCCCTTCGCTGGACCAGTGCGAACAACACTTTCTCTCTCCTTTTGTATAAAACAAACTAAAGTTTAACTCTAGGGTACCAGCTACCCACCTTTGAAACACAATACTTACTAAAGACAAGACTTTAAGGCTAGTCTTTCTACTACTGATGCTAAACAAAGACGTGTAGCGACTGAGCGGGAGATTATAATTTCTATCTACTGTCCAACTCACGACTACTTGCACAAACACAGAGTCTGAGGAAACGGAAGGTACGAGTGATGCCGGGAAACTAGCGGGACTTTCGTCATTGTATAAAAGAAAGCAAATGTGTTGCATGTGTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000098967-'25-28,'25-26,26-28=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact

Alternative protein isoforms (Ref)

No structure available
Features
Disorder rate (Iupred):
  C1=0.333 A=0.348 C2=0.050
Domain overlap (PFAM):

C1:
NO
A:
NO
C2:
NO


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Primers PCR
Suggestions for RT-PCR validation
F:
ACGGCCAACAGAGGAGAACTA
R:
AAGTGTTGTTCGCACTGGTCC
Band lengths:
242-440
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]