RnoEX0073402 @ rn6
Exon Skipping
Gene
ENSRNOG00000009402 | Rabgap1
Description
RAB GTPase activating protein 1 [Source:RGD Symbol;Acc:1304691]
Coordinates
chr3:21811015-21815379:+
Coord C1 exon
chr3:21811015-21811086
Coord A exon
chr3:21812258-21812449
Coord C2 exon
chr3:21813676-21815379
Length
192 bp
Sequences
Splice sites
3' ss Seq
GGTGTTCACTTCAGCAAAAGGTA
3' ss Score
-4.27
5' ss Seq
CAGGTAACA
5' ss Score
8.88
Exon sequences
Seq C1 exon
ATTTGTTCTCAACTGAGTGAAAGACTGGAAAAGCAACAGACAGCCAATAAAGTGGAAATTGAGAAAATCCGG
Seq A exon
GTAGATGACTGTGACCGCTGCCGAGACTTCTTCAACAAAGAAGGGCGAGTGAAAGGTGCCAGCTCAGTCAAGGGGGTTTCAGATGAGGACACAGACGAAGAAAAAGAAACACTCAAGAACCAGCTGCGGGAGCTGGAGCTGGAGCTGGCACAAACCAAACTGCAGCTGGTAGAAGCTGAGTGCAAGATCCAG
Seq C2 exon
GACTTGGAACACCACTTGGGCCTTGCCCTCAGTGAGGTGCAGGCTGCCAAGAAGACCTGGTTTAACCGAACACTGAGCTCCATAAAGACAGCAACGGGCGTGCAAGGGAAAGAGACGTGCTGAGAGCAGCTGCTGCTTCCACACACCTCAGAAAACACACCACCTTTTGTTGCCTTCTTTGGCCAGATGTGTGATTCTGTGATATGTTGCAGGACCAGAATGTACTAGGTCAGAGCTGTATAGTATGTTGGTAGGTCAGTGGGCCAGGGCTCCTGCAGCAGGCTGCCAACCCAACTGACGCTTTGGGCATGCACCAGAGTCCTTCCTCCTAGTGCCATTCAGGCCTCTTTTCTGTATAGGAACACTTCACACAGCCAGAGTTAGGGTATCCCCCAATGTATTGGGTTTTCTTTTTAAACCCTTTAAAAAAAATTGTGTGTGTGTGTGTGTATGTGTGTACATATACACATGCAGACACTCTGCCCTTTTGAGTGGGGAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009402-'52-58,'52-57,53-58
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.273 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAAAAGCAACAGACAGCCA
R:
CACAGAATCACACATCTGGCCA
Band lengths:
248-440
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]