GgaEX1047837 @ galGal4
Exon Skipping
Gene
ENSGALG00000004578 | RABGAP1L
Description
rab GTPase-activating protein 1-like [Source:RefSeq peptide;Acc:NP_001012941]
Coordinates
chr8:7093244-7095137:-
Coord C1 exon
chr8:7095066-7095137
Coord A exon
chr8:7093709-7093906
Coord C2 exon
chr8:7093244-7093399
Length
198 bp
Sequences
Splice sites
3' ss Seq
TAGCTTTCTGGCTATTCCAGGGT
3' ss Score
5.94
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
ATTTGTTCCCAGCTGAGTACCAGGCTGGAAAAACAACAGACAGCCAGTAAAGATGAACTGGAAGTTGTAAAG
Seq A exon
GGTAAAGTGATGGCCTGCAAACACTGCAGTGAGATTTTCAGTAAGGAGGGGACACTGAAGCTGCCTGCTCTAAGCCTGGATAATAAAGGCTTAGAAATAGATGATGAGAAGGATGCACTGAAGAAGCAGCTGAGAGAGATGGAGCTGGAACTTGCACAGACCAAACTGCAGCTTGTGGAAGCCAAGTGCAAAATTCAG
Seq C2 exon
GAGCTGGAGCACCAGAGGGGAGCCCTTATGAATGAAATCCAAGCTGCCAAAAACTCTTGGTTTAGCAAAACCCTGAACTCTATCAAAACTGCCACAGGCACACAGCCACTGCAGCAGCCTCAGCCATCCCTGCCACCCAAGGAGGGCAGCACATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004578-'59-69,'59-67,61-69
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.076 C2=0.471
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TTGTTCCCAGCTGAGTACCAG
R:
CTATGTGCTGCCCTCCTTGG
Band lengths:
226-424
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]