HsaEX0051806 @ hg38
Exon Skipping
Gene
ENSG00000152061 | RABGAP1L
Description
RAB GTPase activating protein 1 like [Source:HGNC Symbol;Acc:HGNC:24663]
Coordinates
chr1:174982834-174990409:+
Coord C1 exon
chr1:174982834-174982905
Coord A exon
chr1:174988641-174988838
Coord C2 exon
chr1:174989849-174990409
Length
198 bp
Sequences
Splice sites
3' ss Seq
ATCTCTTTTGGATACTTTAGGGT
3' ss Score
6.95
5' ss Seq
CAGGTTGGT
5' ss Score
8.08
Exon sequences
Seq C1 exon
ATCTGTTCGCAGTTGAGTACCAGGCTGGAGAAACAGCAAGCAGCCAGCAAGGAGGAGCTGGAAGTGGTAAAG
Seq A exon
GGTAAGATGATGGCATGCAAACACTGCAGTGACATTTTCAGCAAGGAGGGTGCTTTGAAACTAGCAGCCACAGGCAGAGAGGACCAGGGAATTGAAACAGATGATGAGAAGGACTCACTTAAGAAGCAGCTGAGAGAGATGGAACTGGAACTGGCACAAACCAAACTGCAGTTGGTGGAGGCCAAGTGTAAAATTCAG
Seq C2 exon
GAACTTGAACATCAGAGAGGAGCCCTTATGAATGAAATCCAAGCTGCGAAAAACTCTTGGTTTAGCAAAACCCTGAACTCTATCAAAACGGCCACGGGCACCCAGCCATTGCAGCCAGCACCGGTCACCCAGCCACCCAAGGAGAGCACATAGTTCCAGCCTTACCCAAGCACAAGAGCACAATGTTCAAACCAATGGAAATCTGGGAGGATTCTTCCTGGTGTCCCTTTGAAGGAAAGTCAAGGAGGCCAGAAAACAAGCCAGAATTTTTCAGTAGCTCTCACTCTTTCTTGTATGACACTTTTCAAAGGGATGCTATTTAAACTGACCTGTTCTATGTTGAATACCTATTTTCCAGCTTCTGGAAGGCCATGTTCAGATCCATCATAGTATTACACATTATTTTGTTTGCCTGATGTTTAGTTGGAAATAAGTAATTCAGAACTAAATGCTTTTTTATTTAGAATTATTCATAATTATTTTTATCTTACATAAAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000152061-'151-117,'151-115,153-117=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.004 A=0.333 C2=0.520
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCGCAGTTGAGTACCAGGC
R:
ATTGTGCTCTTGTGCTTGGGT
Band lengths:
252-450
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development