RnoEX0001810 @ rn6
Exon Skipping
Gene
ENSRNOG00000051100 | AABR07021547.1
Description
NA
Coordinates
chr13:77979829-77988006:-
Coord C1 exon
chr13:77987963-77988006
Coord A exon
chr13:77983363-77983560
Coord C2 exon
chr13:77979829-77980573
Length
198 bp
Sequences
Splice sites
3' ss Seq
CTGTGTCTCGTGTGTTTCAGGGT
3' ss Score
12.28
5' ss Seq
CAGGTTGGT
5' ss Score
8.08
Exon sequences
Seq C1 exon
AGAAACAGCAAGCAGCCAGCAAGGAGGAGCTAGAAGCAGTAAAG
Seq A exon
GGTAAGATGATGGCATGCAAACACTGCAGTGATATCTTCAGCAAGGAGGGAGCTGGAAAGCCCGTGGCCATAAGTAGAGAAGACCAGGGACTTGAGGCAGATGATGAGAAGGACTCACTCAAGAAGCAGCTGAGGGAGATGGAGCTGGAACTGGCACAAACTAAGCTGCAGCTGGTGGAAGCCAAGTGCAAAATCCAG
Seq C2 exon
GAACTCGAGCATCAGAGAGGAGCGCTTATGAATGAAATACAAGCTGCAAAAAACTCTTGGTTTAGTAAAACCCTGAACTCTATCAAAACAGCCACAGGCACCCAGCCACTCCAGCCGCCACAGGCTCCCCAGCCACCCAAGGAGAGCACATAGCTCCAGCCTCCGCCAAGCACAAGAGCACAATGATCAAAACAACGGAAACCAAGAAGTTTTCCTGTTGTCCCTTTGAAGAAAGTAAAGGAGACCAGAAAGCAAGTTAGACTCTTCTCGGTAGCTCTGTCTTTCATGTATGACATTTTTCAAAGGGATGTTATTTAAACTGACCTGATTTATGTTGAATATCTATTTCCAGCTTCTTCATGGGAAGCCACATTCAGATCCGTCATAGTATTACACATTGTTTTATATGCCTGAAATTTAGTTGGAAATGGGTAATCTAGAACTAAATGCTTTTGTTTAGAATTAACTTCATAATAATTTTTAATCTTACATAAAATGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000051100-'0-3,'0-1,1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCAAGGAGGAGCTAGAAGC
R:
GGGACAACAGGAAAACTTCTTGG
Band lengths:
252-450
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]