BtaEX0023070 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000047606 | MTA1
Description
metastasis associated 1 [Source:HGNC Symbol;Acc:HGNC:7410]
Coordinates
chr21:71365712-71367499:+
Coord C1 exon
chr21:71365712-71365811
Coord A exon
chr21:71366178-71366366
Coord C2 exon
chr21:71367425-71367499
Length
189 bp
Sequences
Splice sites
3' ss Seq
CTGCCTCCCGCCCCACACAGTTC
3' ss Score
8.13
5' ss Seq
TTTGTGAGT
5' ss Score
5.91
Exon sequences
Seq C1 exon
CTCTGTGGGCACCTTTGCCCGGGCCCTGGACTGCAGCAGCTCCGTCCGGCAGCCCAGCCTGCACATGAGCGCCGCGGCCGCCTCCCGGGACATCACCCTG
Seq A exon
TTCCACGCCATGGACACGCTGCACAGGAGCGTGTATGACGTTGCCAAGGCCATCTCAGCCCTGGTGCCGCAGGGTGGGCCCGTGCTCTGCAGGGACGAGATGGAGGAGTGGTCAGCCTCAGAGGCCAGCCTTTTTGAGGAGGCCCTGGAAAAGTACGGGAAAGACTTCACAGACATTCAGCAAGACTTT
Seq C2 exon
CTTCCCTGGAAGTCACTCACCAGCATCATCGAGTATTACTACATGTGGAAGACCACCGACAGATACGTGCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000047606-'9-18,'9-14,10-18
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (disopred):
C1=0.338 A=0.000 C2=0.020
Domain overlap (PFAM):
C1:
PF0144819=ELM2=PD(5.5=8.8)
A:
PF0024926=Myb_DNA-binding=PU(61.7=46.0)
C2:
PF0024926=Myb_DNA-binding=PD(34.0=64.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GACTGCAGCAGCTCCGTC
R:
CTGCTGCACGTATCTGTCGG
Band lengths:
147-336
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development