GgaEX1037279 @ galGal4
Exon Skipping
Gene
ENSGALG00000002803 | MTA1
Description
metastasis-associated protein MTA1 [Source:RefSeq peptide;Acc:NP_001012971]
Coordinates
chr8:4000715-4049943:-
Coord C1 exon
chr8:4049850-4049943
Coord A exon
chr8:4032005-4032193
Coord C2 exon
chr8:4000715-4000866
Length
189 bp
Sequences
Splice sites
3' ss Seq
TCTCTTTTACAACCATGTAGTTC
3' ss Score
3.86
5' ss Seq
TTTGTAAGT
5' ss Score
7.4
Exon sequences
Seq C1 exon
ACCGCCAATGGAAATGTGGAAGCAAAGGTGGTGTGTTTCTACAGAAGAAGAGACATTTCAAGCACACTTATTGTATTGGCAGATAAACATGCAA
Seq A exon
TTCCATGCTATGGACACTTTGCACAAAAATGTCTACGACATTTCCAAGGCGATCTCTGCGCTTGTGCCACAAGGTGGGCCAGTCCTGTGCAGAGATGAGATGGAGGAGTGGTCTGCTTCAGAGGCAAACCTCTTTGAGGAAGCACTAGAAAAATATGGAAAAGATTTCACTGACATTCAGCAAGATTTT
Seq C2 exon
GGACCAAGCCGAAACTTGCTGCTCAATGGGAAATCATACCCAACAAAAGTCCGATTAATTCGTGGTGGATCCATGCCTCCAGTGAAAAGGAGGAGGATGAACTGGATTGATGCACCAGATGATGTTTTCTACATGGCCACTGAAGAAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002803_MULTIEX1-6/16=C1-16
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (disopred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
PF0142613=BAH=FE(19.5=100)
A:
PF0024926=Myb_DNA-binding=PU(61.7=46.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ACCGCCAATGGAAATGTGGAA
R:
TGGTTTCTTCAGTGGCCATGT
Band lengths:
245-434
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]