GgaEX1037279 @ galGal3
Exon Skipping
Gene
ENSGALG00000002803 | MTA1
Description
NA
Coordinates
chr8:4069205-4072005:-
Coord C1 exon
chr8:4071906-4072005
Coord A exon
chr8:4070356-4070544
Coord C2 exon
chr8:4069205-4069279
Length
189 bp
Sequences
Splice sites
3' ss Seq
TCTCTTTTACAACCATGTAGTTC
3' ss Score
3.86
5' ss Seq
TTTGTAAGT
5' ss Score
7.4
Exon sequences
Seq C1 exon
GTCCGTTGGTACATTTGCCCGAGCACTAGATTGCAGTAGTTCTGTCAGACAGCCAAGTTTGCACATGAGTGCTGCAGCAGCCTCTAGGGACATCACACTG
Seq A exon
TTCCATGCTATGGACACTTTGCACAAAAATGTCTACGACATTTCCAAGGCGATCTCTGCGCTTGTGCCACAAGGTGGGCCAGTCCTGTGCAGAGATGAGATGGAGGAGTGGTCTGCTTCAGAGGCAAACCTCTTTGAGGAAGCACTAGAAAAATATGGAAAAGATTTCACTGACATTCAGCAAGATTTT
Seq C2 exon
CTCCCATGGAAATCCTTAACAAGCATAATAGAGTATTACTATATGTGGAAAACTACAGACAGATACGTTCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002803-'18-20,'18-17,21-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (disopred):
C1=0.373 A=0.011 C2=0.160
Domain overlap (PFAM):
C1:
PF0144819=ELM2=PD(5.5=8.8)
A:
PF0024926=Myb_DNA-binding=PU(61.7=46.0)
C2:
PF0024926=Myb_DNA-binding=PD(34.0=64.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGGTACATTTGCCCGAGCAC
R:
CTGCTGAACGTATCTGTCTGT
Band lengths:
170-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]