RnoEX0056152 @ rn6
Exon Skipping
Gene
ENSRNOG00000004711 | Mta1
Description
metastasis associated 1 [Source:RGD Symbol;Acc:621018]
Coordinates
chr6:137939977-137942551:+
Coord C1 exon
chr6:137939977-137940076
Coord A exon
chr6:137940375-137940563
Coord C2 exon
chr6:137942477-137942551
Length
189 bp
Sequences
Splice sites
3' ss Seq
GGAACCCTGCTGTCTTACAGTTT
3' ss Score
5.54
5' ss Seq
TTTGTAAGT
5' ss Score
7.4
Exon sequences
Seq C1 exon
CTCTGTGGGTACCTTTGCACGGGCCCTGGATTGCAGCAGCTCCGTGCGGCAGCCTAGCCTGCACATGAGTGCCGCCGCAGCCTCCCGAGACATCACCCTG
Seq A exon
TTTCATGCCATGGACACGCTGCACAAGAACATCTACGACATCTCCAAGGCCATCTCTGCCCTTGTGCCTCAGGGTGGGCCAGTGCTCTGCAGGGATGAGATGGAGGAGTGGTCAGCATCAGAAGCCAACCTTTTTGAGGAAGCTCTGGAAAAATATGGGAAAGATTTCACAGACATTCAGCAAGACTTT
Seq C2 exon
CTCCCATGGAAGTCGCTCACCAGCATCATTGAGTATTACTACATGTGGAAGACCACCGACAGATACGTCCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004711-'9-14,'9-12,10-14
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (disopred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
PF0144819=ELM2=PD(5.5=8.8)
A:
PF0024926=Myb_DNA-binding=PU(61.7=46.0)
C2:
PF0024926=Myb_DNA-binding=PD(34.0=64.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTACCTTTGCACGGGCCC
R:
GGACGTATCTGTCGGTGGTCT
Band lengths:
162-351
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]