BtaEX0023233 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015325 | MTOR
Description
mechanistic target of rapamycin (serine/threonine kinase) [Source:HGNC Symbol;Acc:HGNC:3942]
Coordinates
chr16:43296151-43297422:+
Coord C1 exon
chr16:43296151-43296243
Coord A exon
chr16:43296930-43297064
Coord C2 exon
chr16:43297293-43297422
Length
135 bp
Sequences
Splice sites
3' ss Seq
GTGACCTTTTTCCTGTCCAGGTG
3' ss Score
11.11
5' ss Seq
GAGGTAGGA
5' ss Score
8.24
Exon sequences
Seq C1 exon
GTTAGTGGCCTTGAAATGAGGAAATGGGTTGATGAACTTTTTATTATCATCATGGACATGCTCCAAGACTCCTCTCTGTTGGCCAAAAGGCAG
Seq A exon
GTGGCTCTGTGGACCTTGGGGCAGTTGGTGGCCAGCACTGGCTACGTGGTAGAGCCCTACAGGAAGTACCCCACATTGCTGGAGGTGCTGCTGAACTTTCTGAAGACTGAGCAAAACCAGGGTACACGGCGGGAG
Seq C2 exon
GCTATCCGTGTGTTGGGGCTCCTAGGGGCATTGGATCCCTACAAGCACAAAGTGAACATTGGCATGATCGACCAGTCCCGGGACGCTTCTGCCGTCAGCCTGTCAGAGTCCAAGTCAAGTCAGGATTCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015325-'22-17,'22-16,23-17
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.045
Domain overlap (PFAM):
C1:
NO
A:
PF118653=DUF3385=PU(17.0=64.4)
C2:
PF118653=DUF3385=FE(25.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTAGTGGCCTTGAAATGAGGA
R:
TCCTGACTTGACTTGGACTCTGA
Band lengths:
218-353
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development