GgaEX0004374 @ galGal4
Exon Skipping
Gene
ENSGALG00000003339 | MTOR
Description
mechanistic target of rapamycin (serine/threonine kinase) [Source:HGNC Symbol;Acc:HGNC:3942]
Coordinates
chr21:4183696-4184754:-
Coord C1 exon
chr21:4184662-4184754
Coord A exon
chr21:4184170-4184304
Coord C2 exon
chr21:4183696-4183825
Length
135 bp
Sequences
Splice sites
3' ss Seq
TCTGGATTTAACCTTTCCAGGTG
3' ss Score
7.93
5' ss Seq
GAGGTACGA
5' ss Score
8.65
Exon sequences
Seq C1 exon
GTCAGTGGGCTGGAGATGAGGAAGTGGGTGGATGAACTCTTCATTATAATTATGGACATGCTACAGGACTCTTCCCTGCTGGCTAAAAGACAA
Seq A exon
GTGGCTCTTTGGACACTGGGTCAGCTTGTGGCTAGCACTGGTTATGTGGTGGAACCCTACAGGAAGTACCCAACTTTATTGGAGGTGCTTCTGAACTTCCTAAAGACTGAGCAGAACCAGGGCACCCGTAGAGAG
Seq C2 exon
GCTATTCGTGTGTTAGGGCTGCTGGGTGCTTTGGACCCCTACAAACACAAGGTGAACATTGGCATGATTGATCAGTCACGAGATGCTTCTGCTGTCAGCCTCTCGGAGTCCAAATCTAGCCAGGATTCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003339_CASSETTE4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.045
Domain overlap (PFAM):
C1:
NO
A:
PF118653=DUF3385=PU(17.0=64.4)
C2:
PF118653=DUF3385=FE(25.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCAGTGGGCTGGAGATGAGG
R:
TCCTGGCTAGATTTGGACTCCG
Band lengths:
218-353
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]