DreEX6051527 @ danRer10
Exon Skipping
Gene
ENSDARG00000053196 | mtor
Description
mechanistic target of rapamycin (serine/threonine kinase) [Source:ZFIN;Acc:ZDB-GENE-030131-2974]
Coordinates
chr8:46267616-46275835:-
Coord C1 exon
chr8:46275743-46275835
Coord A exon
chr8:46269735-46269869
Coord C2 exon
chr8:46267616-46267745
Length
135 bp
Sequences
Splice sites
3' ss Seq
ATCATCTTCTCTTCCACTAGGTG
3' ss Score
11.07
5' ss Seq
GAGGTACTG
5' ss Score
7.67
Exon sequences
Seq C1 exon
GTGAGTGGACTGGAGATGAGGAAATGGATGGATGAGCTGTTCCCAATCATTATGGACATGCTGCAGGACTCATCTTCATTAGCCAAGAGACAG
Seq A exon
GTGGCACTTTGGACTCTGGGCCAACAAGTAGCCAGCACTGGGTATGTGGTGGAGCCTTACAGGAAGTATCCATCTCTACTGGAGGTGCTGCTCAACTTCCTGAAGACAGAACAAAACCAGGGGATCAGGAGAGAG
Seq C2 exon
GCCATTCGTGTTCTAGGTCTGCTAGGAGCTCTGGATCCCTACAAACACAAAGTGAACATCGGAATGATCGACCAGTCTCGAGATGCTTCTGCCGTCAGCCTCTCCGAGTCCAAGTCCAGCCAGGATTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000053196-'16-16,'16-15,17-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.045
Domain overlap (PFAM):
C1:
NO
A:
PF118653=DUF3385=PU(17.0=64.4)
C2:
PF118653=DUF3385=FE(25.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAGTGGACTGGAGATGAGGA
R:
TCCTGGCTGGACTTGGACTC
Band lengths:
218-353
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]