MmuEX6097910 @ mm10
Exon Skipping
Gene
ENSMUSG00000028991 | Mtor
Description
mechanistic target of rapamycin (serine/threonine kinase) [Source:MGI Symbol;Acc:MGI:1928394]
Coordinates
chr4:148469367-148470701:+
Coord C1 exon
chr4:148469367-148469459
Coord A exon
chr4:148470222-148470356
Coord C2 exon
chr4:148470572-148470701
Length
135 bp
Sequences
Splice sites
3' ss Seq
GTGGCCTTTTGTTGATTCAGGTG
3' ss Score
8.38
5' ss Seq
GAGGTACAC
5' ss Score
5.99
Exon sequences
Seq C1 exon
GTGAGCGGCCTGGAAATGCGGAAGTGGGTGGACGAGCTCTTTATCATCATCATGGACATGCTGCAGGACTCCTCCCTGCTGGCCAAAAGGCAG
Seq A exon
GTGGCTTTGTGGACCCTGGGACAGTTGGTGGCCAGCACTGGCTATGTGGTGGAGCCCTACAGGAAGTACCCCACTTTGCTTGAAGTGCTGCTGAATTTCCTGAAGACGGAGCAGAACCAGGGCACTCGGAGAGAG
Seq C2 exon
GCTATCCGAGTGTTGGGGCTCCTTGGGGCTTTGGATCCCTACAAGCACAAAGTGAACATCGGCATGATCGACCAGTCCCGGGACGCTTCCGCTGTCAGCCTGTCAGAGTCCAAGTCAAGTCAGGATTCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028991-'20-30,'20-22,29-30=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.057
Domain overlap (PFAM):
C1:
NO
A:
PF118653=DUF3385=PU(17.0=64.4)
C2:
PF118653=DUF3385=FE(25.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAGCGGCCTGGAAATGC
R:
TCCTGACTTGACTTGGACTCTGA
Band lengths:
218-353
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types