RnoEX0056481 @ rn6
Exon Skipping
Gene
ENSRNOG00000009615 | Mtor
Description
mechanistic target of rapamycin kinase [Source:RGD Symbol;Acc:68371]
Coordinates
chr5:165284457-165285919:+
Coord C1 exon
chr5:165284457-165284549
Coord A exon
chr5:165285304-165285438
Coord C2 exon
chr5:165285790-165285919
Length
135 bp
Sequences
Splice sites
3' ss Seq
GTGGCTGTTCGTCCACCCAGGTG
3' ss Score
8.43
5' ss Seq
GAGGTACAC
5' ss Score
5.99
Exon sequences
Seq C1 exon
GTTAGCGGCCTGGAGATGAGGAAGTGGGTGGACGAGCTCTTTGTCATCATCATGGACATGCTGCAGGACTCCTCTCTTCTGGCCAAAAGACAG
Seq A exon
GTGGCTTTGTGGACCCTGGGACAGTTGGTGGCCAGTACTGGCTACGTGGTGGAGCCCTACAGGAAGTACCCCACTCTGCTTGAAGTGCTGCTGAATTTTCTGAAGACGGAGCAGAACCAGGGCACTCGGAGAGAG
Seq C2 exon
GCCATCCGAGTGTTAGGGCTCCTCGGGGCTTTGGACCCCTACAAGCACAAAGTGAACATCGGCATGATTGACCAGTCCCGAGATGCTTCTGCTGTCAGCCTGTCAGAATCCAAGTCAAGTCAAGATTCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009615-'22-21,'22-20,23-21
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.045
Domain overlap (PFAM):
C1:
NO
A:
PF118653=DUF3385=PU(17.0=64.4)
C2:
PF118653=DUF3385=FE(25.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGCCTGGAGATGAGGAAGT
R:
AGGAATCTTGACTTGACTTGGA
Band lengths:
218-353
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]