HsaEX0040672 @ hg19
Exon Skipping
Gene
ENSG00000198793 | MTOR
Description
mechanistic target of rapamycin (serine/threonine kinase) [Source:HGNC Symbol;Acc:3942]
Coordinates
chr1:11290982-11292585:-
Coord C1 exon
chr1:11292493-11292585
Coord A exon
chr1:11291357-11291491
Coord C2 exon
chr1:11290982-11291111
Length
135 bp
Sequences
Splice sites
3' ss Seq
GTGTTCTTGTGCCTATCCAGGTG
3' ss Score
10.66
5' ss Seq
GAGGTAGGG
5' ss Score
7.81
Exon sequences
Seq C1 exon
GTTAGTGGCCTGGAAATGAGGAAATGGGTTGATGAACTTTTTATTATCATCATGGACATGCTCCAGGATTCCTCTTTGTTGGCCAAAAGGCAG
Seq A exon
GTGGCTCTGTGGACCCTGGGACAGTTGGTGGCCAGCACTGGCTATGTAGTAGAGCCCTACAGGAAGTACCCTACTTTGCTTGAGGTGCTACTGAATTTTCTGAAGACTGAGCAGAACCAGGGTACACGCAGAGAG
Seq C2 exon
GCCATCCGTGTGTTAGGGCTTTTAGGGGCTTTGGATCCTTACAAGCACAAAGTGAACATTGGCATGATAGACCAGTCCCGGGATGCCTCTGCTGTCAGCCTGTCAGAATCCAAGTCAAGTCAGGATTCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198793-'20-19,'20-18,21-19
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.045
Domain overlap (PFAM):
C1:
NO
A:
PF118653=DUF3385=PU(17.0=64.4)
C2:
PF118653=DUF3385=FE(25.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCCTGGAAATGAGGAAATGG
R:
AGGAATCCTGACTTGACTTGGA
Band lengths:
218-353
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)