BtaEX0023554 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006377 | MYO1G
Description
myosin IG [Source:HGNC Symbol;Acc:HGNC:13880]
Coordinates
chr4:77331585-77333095:+
Coord C1 exon
chr4:77331585-77331698
Coord A exon
chr4:77332630-77332784
Coord C2 exon
chr4:77332866-77333095
Length
155 bp
Sequences
Splice sites
3' ss Seq
TGCGACCCTGCCCCCCTCAGGTG
3' ss Score
9.06
5' ss Seq
GGGGTGAGT
5' ss Score
7.93
Exon sequences
Seq C1 exon
GTGAATCGCTTCAACAAAAGCCGGGACCGGGCACTGTTGCTCACAGATCGGCACCTCTACAAGCTGGAGCCAGGCCGGCAGTACCGGGTGATGCGGGCCGTGCCCCTGGATGCG
Seq A exon
GTGACCGGGCTGAGCGTGACCAGCGGGCGGGACCAGCTGGTGGTGCTGCATGCGCGGGGCTATGACGACCTGGTGGTGTGTCTGCACCGCTCCCAGCCGCCACTGGATAACCGCATCGGGGAGCTGGTGGGGGTGCTGGCTGCGCACTGCCAGGG
Seq C2 exon
GGAGGGACGGGCCCTGGAGGTCCGAGTGTCCGATTGCATCCCCCTGACCCAGCGCGGGGCCCGGCGCCTGGTATCCGTGGAGCCCAGATCGGAGCAGCCAGAGCCGGATTTCCGCTGCAGCCGTGGCGCCTTCACCCTCCTGTGGCCGAGCTGCTGAGAGGTTCTCCACCTGCACCCACACCAGTGACAGATCGCAGTCTCGCTGTGCAATAAAGGATGCTGAGTCTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006377_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.096
Domain overlap (PFAM):
C1:
PF060178=Myosin_TH1=FE(18.1=100)
A:
PF060178=Myosin_TH1=FE(25.0=100)
C2:
PF060178=Myosin_TH1=PD(24.5=94.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTCTACAAGCTGGAGCCAG
R:
GATCTGTCACTGGTGTGGGTG
Band lengths:
255-410
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development