MmuEX6083891 @ mm10
Exon Skipping
Gene
ENSMUSG00000020437 | Myo1g
Description
myosin IG [Source:MGI Symbol;Acc:MGI:1927091]
Coordinates
chr11:6506548-6507982:-
Coord C1 exon
chr11:6507869-6507982
Coord A exon
chr11:6506907-6507061
Coord C2 exon
chr11:6506548-6506832
Length
155 bp
Sequences
Splice sites
3' ss Seq
ACTCCAAGCTGTCTTCTCAGGTG
3' ss Score
5.73
5' ss Seq
GGGGTGAGT
5' ss Score
7.93
Exon sequences
Seq C1 exon
GTGAATCGCTTCCGCAAGAGCCGGGACCGGGCCCTTCTGCTCACAGATCGGTATCTGTACAAGCTGGAGCCTGGACGACAGTACCGGGTGATGCGGGCTGTGCCTCTGGAGGCG
Seq A exon
GTGACAGGGCTGAGTGTGACCAGTGGAAGAGATCAGCTGGTGGTGTTACATGCCCAAGGCTATGATGATCTTGTAGTGTGTCTACACCGTTCCCAACCACCACTGGACAATCGAATTGGGGAGCTGGTGGGCATGCTGGCTGCACACTGCCAGGG
Seq C2 exon
AGAGGGACGAACTCTGGAGGTCCGTGTCTCTGACTGCATCCCACTGAGCCAGCGTGGTGCCCGGCGCCTCATTTCTGTGGAGCCCAGGCCAGAGCAGCCTGAGCCAGATTTCCAAAGCAGCCGTAGCACCTTTACCCTCCTCTGGCCAAGCCACTGAGCAAGGCCAAACCAGTTTAACCTGGTTTCCACGCTGTTCTAAATACCTGGTCTTGACTGCACTAAAGGCCAGGACTTGTCTACCCTTACATGGAACATTGCAAAATAAAGATGTTATATTTGTTTTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020437-'48-42,'48-41,51-42
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.346
Domain overlap (PFAM):
C1:
PF060178=Myosin_TH1=FE(18.1=100)
A:
PF060178=Myosin_TH1=FE(25.0=100)
C2:
PF060178=Myosin_TH1=PD(24.5=94.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTACAAGCTGGAGCCTGGA
R:
GAACAGCGTGGAAACCAGGTT
Band lengths:
256-411
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types