GgaEX7001684 @ galGal4
Exon Skipping
Gene
ENSGALG00000005644 | MYO1G
Description
unconventional myosin-Ig [Source:RefSeq peptide;Acc:NP_001026132]
Coordinates
chr2:4046148-4047178:+
Coord C1 exon
chr2:4046148-4046261
Coord A exon
chr2:4046630-4046784
Coord C2 exon
chr2:4046887-4047178
Length
155 bp
Sequences
Splice sites
3' ss Seq
CCCCCTCGTGACCCTTGCAGGTG
3' ss Score
10.5
5' ss Seq
AACGTGAGT
5' ss Score
9.54
Exon sequences
Seq C1 exon
ATCAACCGCTTCAACAAGAGCCGGGACCGTGCCATCCTGATCACCGACCAGCACCTCTACAAGTTGGAGCCCCGGAAGCAGTACCGGGTGATGCGGGAGCTGCCGCTCAGCATG
Seq A exon
GTGACGGGGCTGAGTGTGACGAGCTGCCGGGCGCAGCTGGTGGTCTTCCACACGCAGAACCACGATGACCTGGCCGTCTGCCTGCACAAGACACAGCCGCGGGGAGACGAGCGGGTGGGCGAGCTGGTGGGCGTCCTGCTGGAGCACTGCCGAAC
Seq C2 exon
GACCAAGCGGGAGCTGCAGGTCCATGTCTCCGACCGCATCCAGCTGAGCCTGCGGGGGCGCAAGAGGTTGCTGACCGTGGAAACTCAGCCCGACGTGGCTGCCCCTGATTTCCGCAAGAGTCGTGATGGTTTTGTGCTCTACTGGCCTGGGAGCTGAGGGGGTGGACGCCGTGTCCCCCACCGCTGCCACCGGTGCTGTGGTGACAGGGCACAGCTGTGTCCTGCATCCCTGCCCCATGCCCTGCATCCCCCCCAGCCCTGCATCCCCCCCATCCCACCTCCCCCTTCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005644-'22-31,'22-29,23-31=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.038 C2=0.000
Domain overlap (PFAM):
C1:
PF060178=Myosin_TH1=FE(18.1=100)
A:
PF060178=Myosin_TH1=FE(25.0=100)
C2:
PF060178=Myosin_TH1=PD(24.5=94.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TCAACCGCTTCAACAAGAGCC
R:
CCATCACGACTCTTGCGGAAA
Band lengths:
242-397
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]