RnoEX0057352 @ rn6
Exon Skipping
Gene
ENSRNOG00000059140 | Myo1g
Description
myosin IG [Source:RGD Symbol;Acc:1306016]
Coordinates
chr14:86781202-86782704:-
Coord C1 exon
chr14:86782591-86782704
Coord A exon
chr14:86781602-86781756
Coord C2 exon
chr14:86781202-86781528
Length
155 bp
Sequences
Splice sites
3' ss Seq
ACCCCAAGCTGTCGTCTCAGGTG
3' ss Score
4.36
5' ss Seq
GGGGTGAGT
5' ss Score
7.93
Exon sequences
Seq C1 exon
GTGAATCGATTCCGCAAGCGCCGGGACCGGGCCCTTCTGCTCACAGACCGGCATCTCTACAAGCTGGAACCTGGACGACAGTACCGGGTGATGCGGGCTGTGCCTCTGGATGCG
Seq A exon
GTGACAGGGCTGAGTGTGACCAGTGGACGGGACCAGCTGGTGGTGCTACACGCCCAAGGCCATGATGATCTTGTAGTGTGTCTACACCGTTCCCAGCCACCCCTAGACAATCGAATTGGGGAGCTGGTGGGCATGCTGGTTTCACACTGCCAGGG
Seq C2 exon
GGAGGGACGAACCCTGGAGATCCGTGTCTCTGACTGTATCCCACTGAGCCAGCGTGGTGCCCGGCGCCTCATTTCCGTAGAGCCCAGGCCAGAGCAGACTGAGCCAGATTTCCAATGCAGCCGCAGTACCTTTACCCTCCTCTGGCCAAGCCACTGAGCAAGCTCAAGCCAGCCTAGCCTGGTCTCCGCACAGTTCTAGACACCTGGTCTTGACCGTACTAAAGGCTAGGATTTGTCCACCTTTATATAGAATGCCACAAAATAAAGATGCTATATTTGTACCCAGTGTGGCTGTCATTGCCTTGGCCAATGTTACCTTACCCAGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000059140_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.212
Domain overlap (PFAM):
C1:
PF060178=Myosin_TH1=FE(18.1=100)
A:
PF060178=Myosin_TH1=FE(25.0=100)
C2:
PF060178=Myosin_TH1=PD(24.5=94.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACAGACCGGCATCTCTACA
R:
CTTGAGCTTGCTCAGTGGCTT
Band lengths:
242-397
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]