DmeEX6006391 @ dm6
Exon Skipping
Gene
FBgn0086347 | Myo31DF
Description
The gene Myosin 31DF is referred to in FlyBase by the symbol DmelMyo31DF (CG7438, FBgn0086347). It is a protein_coding_gene from Dmel. It has 4 annotated transcripts and 4 polypeptides (1 unique). Gene sequence location is 2L:10491814..10506779. Its molecular function is described by: phosphatidylinositol-4,5-bisphosphate binding; actin filament binding; microfilament motor activity; ATP binding; actin-dependent ATPase activity. It is involved in the biological process described with 6 unique terms, many of which group under: pattern specification process; cellular process; mesoderm development; actin filament-based movement; epithelium development. 48 alleles are reported. The phenotypes of these alleles manifest in: cell cluster organ; adult gut; adult tagma; gonad; epidermal cell. The phenotypic classes of alleles include: axis specification defective; some die during P-stage; increased mortality; phenotype. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of low expression. Peak expression observed within 18-24 hour embryonic stages.
Coordinates
chr2L:10491814-10494195:-
Coord C1 exon
chr2L:10492789-10494195
Coord A exon
chr2L:10492557-10492714
Coord C2 exon
chr2L:10491814-10492499
Length
158 bp
Sequences
Splice sites
3' ss Seq
TATCTTGACTTCGCTTACAGTTG
3' ss Score
7.32
5' ss Seq
TGAGTAAGT
5' ss Score
8.82
Exon sequences
Seq C1 exon
AGCTGGCCAATCGCTTACGGAAAGCCAAGCAGATGCGCGACTACGGCAAGAGCATCCAGTGGCCACAGCCGCCGCTCGCCGGACGTAAGGTGGAGGCTAAACTGCATCGTATGTTCGATTTCTGGCGAGCCAACATGATCCTGCACAAATATCCTCGCAGCGAGTGGCCGCAATTACGTCTGCAGATTATCGCCGCCACTGCGCTGGCCGGAAGACGACCCTATTGGGGTCAAGCGCGCCGCTGGGTGGGTGATTATCTGGCCAACTCGCAGGAGAACAGCGGATATGAAGCCTACAACGGAAGCATAAAGAACATAAGGAACCACCCCGCCGACGGCGAGACCTTCCAGCAAGTGCTCTTCTCCTCATTCGTCAAGAAGTTCAACCATTTCAACAAGCAGGCTAATCGCGCCTTCATCGTTTCCGATTCGACCATCCACAAACTGGACGGTATCAAGAATAAATTTAAGGACATGAAACGCACCATTAAAATTAGGGAG
Seq A exon
TTGACGTCCATTAGTGTCTCACCCGGCCGGGATCAACTAATCGTCTTCCACTCGTCGAAAAACAAGGATTTAGTGTTTTCCCTGGAGAGCGAGTACACGCCCCTCAAGGAAGATCGCATTGGCGAAGTGGTGGGCATTGTGTGCAAGAAATACCATGA
Seq C2 exon
CCTCACTGGAACCGAGTTGCGTGTGAATGTGACCACCAATATTTCCTGTCGCCTAGACGGCAAGGCACGCATTATTACCGTGGAGGCGGCGTCCAATGTGGAGGTCCCCAACTTCCGTCCTAAAGAGGGCAACATCATTTTCGAGGTGCCGGCGGCGTACTGCGTTTAGGCGGAATCAACTCCGCCCAACTGTATTGTAAATTATGGAACCTAGTTTTAAGACTGGGCTCATCACCCTCTTTTCTACTTGTGACCCATGTGTCCCACCAAGGACATGACGACTCTGTGTATACCGTGCCTTCCGCCAAACACCCGCTTTGTAGTTTTTAATACGTCATTCTATAGTTAGTCCTATCTGTTTATCTGTTCTGTGTGTGACGACATGATTGTAATTTTGTACATTTTTCTATTATGCGTATGCGTTAAGGCGATATTTATTTAACATCCATGTGAGAGGAATACCACCTCCGCCGGTTGAGCTGGCCGACGAAAAGAACGAA
VastDB Features
Vast-tools module Information
Secondary ID
FBgn0086347-'11-11,'11-10,12-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.015 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=PD(36.2=51.6),PF0061222=IQ=WD(100=4.3),PF060178=Myosin_TH1=PU(50.2=22.6)
A:
PF060178=Myosin_TH1=FE(24.6=100)
C2:
PF060178=Myosin_TH1=PD(24.2=89.5)
Main Inclusion Isoform:
FBpp0079625

Main Skipping Isoform:
NA
Other Inclusion Isoforms:
FBpp0079626, FBpp0293078
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTTTCCGATTCGACCATCCA
R:
ATTCCGCCTAAACGCAGTACG
Band lengths:
258-416
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Neural diversity
- Neurogenesis
- Neuronal activity
- Splicing factor regulation (brain)
- Splicing factor regulation (SL2)