MmuEX6088161 @ mm10
Exon Skipping
Gene
ENSMUSG00000035441 | Myo1d
Description
myosin ID [Source:MGI Symbol;Acc:MGI:107728]
Coordinates
chr11:80482126-80586960:-
Coord C1 exon
chr11:80586847-80586960
Coord A exon
chr11:80557434-80557588
Coord C2 exon
chr11:80482126-80484382
Length
155 bp
Sequences
Splice sites
3' ss Seq
TGTGTGTTCCCTCCTTGCAGTTG
3' ss Score
12.12
5' ss Seq
GAGGTAAAA
5' ss Score
7.3
Exon sequences
Seq C1 exon
GTGAATCGGTTTAGTAAGGTAGAAGACCGAGCAATTTTTGTCACTGACCGTCACCTGTATAAAATGGACCCCACTAAGCAGTACAAGGTGATGAAGACTATCCCACTGTACAAC
Seq A exon
TTGACTGGTCTGAGTGTCTCCAATGGAAAGGACCAACTTGTAGTGTTCCATACAAAAGACAACAAAGACCTCATTGTCTGCCTCTTCAGCAAACAGCCAACCCATGAGAGTCGTATTGGAGAACTTGTTGGAGTCCTGGTGAATCATTTCAAGAG
Seq C2 exon
TGAGAAGCGCCACCTTCAAGTGAACGTCACCAACCCGGTGCAGTGCAGCCTGCACGGGAAGAAATGCACCGTCTCTGTGGAGACCCGGCTCAATCAGCCACAGCCTGACTTCACCAAGAACCGCTCGGGCTTCATCCTCAGTGTGCCCGGGAACTGACTGCTGCACATCAGAGGCCTGGCCCAGGGGAGCAAGAGCCTGAGCCTGGCACAAAAGGCAGGCAGGCCCTCACTCGTCCTCTGCATCCCCACACTCGTTCCACCTCGATCAGCATCCCAGGAGCTCAGCTAATCGCTGTCTGCCCTCTAATGCCACTAGAAATCAGCTTGTAAGGGCCTCTGCTAGGCAGGGCTCCTCTGCCTTCTCATGGCCCTGCCCATGAGTTGTCCTACCTGGCTTTCTGCCTCTGCCTCTGCCCTCTCAACTTTCCATACCCCCGCTCAGGAAACCAAAGACCCTCTTCAGCCCTCTGGGCTGACAGCTAAACCACTTCCCACCTCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035441-'41-45,'41-41,43-45
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.058
Domain overlap (PFAM):
C1:
PF060178=Myosin_TH1=FE(18.1=100)
A:
PF060178=Myosin_TH1=FE(25.0=100)
C2:
PF060178=Myosin_TH1=PD(24.5=94.3)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCACTGACCGTCACCTGTA
R:
CCTCTGATGTGCAGCAGTCAG
Band lengths:
250-405
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types