HsaEX6022010 @ hg19
Exon Skipping
Gene
ENSG00000176658 | MYO1D
Description
myosin ID [Source:HGNC Symbol;Acc:7598]
Coordinates
chr17:30819628-30965853:-
Coord C1 exon
chr17:30965740-30965853
Coord A exon
chr17:30932105-30932259
Coord C2 exon
chr17:30819628-30821933
Length
155 bp
Sequences
Splice sites
3' ss Seq
CATGCATTTTCTCTTTGCAGTTG
3' ss Score
10.44
5' ss Seq
GAGGTAAAG
5' ss Score
8.27
Exon sequences
Seq C1 exon
GTAAATCGATTTAGTAAGGTGGAAGACAGAGCAATTTTTGTCACTGACCGTCACCTGTATAAAATGGATCCCACTAAACAGTACAAGGTGATGAAGACTATCCCTCTATACAAT
Seq A exon
TTGACTGGTCTGAGTGTCTCCAATGGAAAGGACCAACTTGTAGTGTTCCATACGAAAGACAACAAAGACCTCATTGTCTGCCTCTTCAGCAAACAGCCAACCCATGAGAGTCGAATTGGAGAACTTGTTGGAGTGCTGGTGAATCATTTCAAGAG
Seq C2 exon
TGAGAAGCGCCACCTTCAAGTGAACGTCACCAACCCAGTACAGTGCAGCCTGCACGGGAAGAAGTGCACCGTCTCCGTGGAGACGCGGCTCAACCAGCCCCAGCCCGACTTCACCAAGAATCGCTCGGGCTTCATCCTCAGCGTGCCCGGGAACTGACGCCCCGCGGAGGCCTGGCCCGGAGCCCGGCCACACTCCGAGTCCTGGGTCCCAGTCCAGCTGCTGCCTCCCAACCCATGCCCGCTAGAAACCTGCTGCGAGGGCCCCTCCCAGAGGAGCCCCGCCCCTGTAAGATTTCCTTCCTGGTTTTCTGCCTTTGGTATCATCTTCCTCTGTCCTTACTGTCCACGGTCCCTGTTCAATAAGCCAAAGACCCTGGTGCCCCGCCCAGACCCCTGGGCTGACGTCCAGACCAATCTCACCCCAGAGGCAACTGGATGGTGCCTTTAGTTGGTGCGGATGCCCCGTGGCCAGGTCAAGTCAGAGCACCTGGACAGGTGTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000176658-'28-30,'28-29,29-30=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.058
Domain overlap (PFAM):
C1:
PF060178=Myosin_TH1=FE(18.1=100)
A:
PF060178=Myosin_TH1=FE(25.0=100)
C2:
PF060178=Myosin_TH1=PD(24.5=94.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AGTAAGGTGGAAGACAGAGCA
R:
CACGCTGAGGATGAAGCCC
Band lengths:
247-402
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)