HsaEX6022010 @ hg38
Exon Skipping
Gene
ENSG00000176658 | MYO1D
Description
myosin ID [Source:HGNC Symbol;Acc:HGNC:7598]
Coordinates
chr17:32492522-32638835:-
Coord C1 exon
chr17:32638722-32638835
Coord A exon
chr17:32605087-32605241
Coord C2 exon
chr17:32492522-32494915
Length
155 bp
Sequences
Splice sites
3' ss Seq
CATGCATTTTCTCTTTGCAGTTG
3' ss Score
10.44
5' ss Seq
GAGGTAAAG
5' ss Score
8.27
Exon sequences
Seq C1 exon
GTAAATCGATTTAGTAAGGTGGAAGACAGAGCAATTTTTGTCACTGACCGTCACCTGTATAAAATGGATCCCACTAAACAGTACAAGGTGATGAAGACTATCCCTCTATACAAT
Seq A exon
TTGACTGGTCTGAGTGTCTCCAATGGAAAGGACCAACTTGTAGTGTTCCATACGAAAGACAACAAAGACCTCATTGTCTGCCTCTTCAGCAAACAGCCAACCCATGAGAGTCGAATTGGAGAACTTGTTGGAGTGCTGGTGAATCATTTCAAGAG
Seq C2 exon
TGAGAAGCGCCACCTTCAAGTGAACGTCACCAACCCAGTACAGTGCAGCCTGCACGGGAAGAAGTGCACCGTCTCCGTGGAGACGCGGCTCAACCAGCCCCAGCCCGACTTCACCAAGAATCGCTCGGGCTTCATCCTCAGCGTGCCCGGGAACTGACGCCCCGCGGAGGCCTGGCCCGGAGCCCGGCCACACTCCGAGTCCTGGGTCCCAGTCCAGCTGCTGCCTCCCAACCCATGCCCGCTAGAAACCTGCTGCGAGGGCCCCTCCCAGAGGAGCCCCGCCCCTGTAAGATTTCCTTCCTGGTTTTCTGCCTTTGGTATCATCTTCCTCTGTCCTTACTGTCCACGGTCCCTGTTCAATAAGCCAAAGACCCTGGTGCCCCGCCCAGACCCCTGGGCTGACGTCCAGACCAATCTCACCCCAGAGGCAACTGGATGGTGCCTTTAGTTGGTGCGGATGCCCCGTGGCCAGGTCAAGTCAGAGCACCTGGACAGGTGTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000176658-'66-91,'66-81,73-91
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.058
Domain overlap (PFAM):
C1:
PF060178=Myosin_TH1=FE(18.1=100)
A:
PF060178=Myosin_TH1=FE(25.0=100)
C2:
PF060178=Myosin_TH1=PD(24.5=94.3)
Main Skipping Isoform:
ENST00000394649fB20549
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTAAGGTGGAAGACAGAGCA
R:
CACGCTGAGGATGAAGCCC
Band lengths:
247-402
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains