RnoEX0057310 @ rn6
Exon Skipping
Gene
ENSRNOG00000003276 | Myo1d
Description
myosin ID [Source:RGD Symbol;Acc:621321]
Coordinates
chr10:67866940-67965600:-
Coord C1 exon
chr10:67965487-67965600
Coord A exon
chr10:67936673-67936827
Coord C2 exon
chr10:67866940-67869197
Length
155 bp
Sequences
Splice sites
3' ss Seq
CTGTGTGCCCCTCTTTGCAGTTG
3' ss Score
10.84
5' ss Seq
GAGGTAAAA
5' ss Score
7.3
Exon sequences
Seq C1 exon
GTGAATCGATTTAGTAAGGTAGAAGACCGAGCAATTTTTGTCACTGACCGTCACCTGTATAAAATGGACCCCACTAAGCAGTACAAGGTGATGAAGACCATCCCACTGTACAAT
Seq A exon
TTGACTGGCCTGAGTGTGTCCAATGGAAAGGACCAGCTTGTAGTGTTCCACACAAAAGACAACAAAGACCTCATCGTCTGCCTCTTCAGCAAACAGCCGACCCATGAGAGCCGGATTGGAGAACTTGTTGGAGTCCTGGTGAATCATTTCAAGAG
Seq C2 exon
TGAGAAGCGCCACCTTCAAGTGAACGTCACCAACCCGGTGCAGTGCAGCCTGCATGGGAAGAAATGCACCGTATCCGTGGAGACCCGGCTTAACCAGCCACAGCCTGACTTCACCAAGAACCGCTCCGGCTTCATCCTCAGTGTGCCCGGGAATTGACTGCTGCACACCGGAGGCCTGGCCCAGGGGAGCAAGAGCCTGGGCCTGGCACACAGCAGGCCAGGTCCTCGGCCTCGCCATCCCCACATCTGTTCCACCTCGCTCAACATCCCAGGAGCTCGGCTAATCGCTGTTTGCCCTCTAATGCCACTAGAAATCAGCTTGCAAGGGCCTCCGCTGGGCAGGACTCCTCTGCCTTTTCTGTGGCCCTGCTCATGACCTGTCCTACCTGGCTTTCTGCCTCTGCCCTGCCTCTGCTCTCTCAACTTTCCATACTCCCTGCTCAGGAAACCAAAGACCCTCTTCAGCCTGCTGGGCTGACAGCTAGACCACTTCCCACCCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003276-'38-43,'38-41,40-43
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.058
Domain overlap (PFAM):
C1:
PF060178=Myosin_TH1=FE(18.1=100)
A:
PF060178=Myosin_TH1=FE(25.0=100)
C2:
PF060178=Myosin_TH1=PD(24.5=94.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCACTGACCGTCACCTGTA
R:
GGTGTGCAGCAGTCAATTCCC
Band lengths:
245-400
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]