DreEX0006129 @ danRer10
Exon Skipping
Gene
ENSDARG00000036863 | MYO1D
Description
myosin ID [Source:HGNC Symbol;Acc:HGNC:7598]
Coordinates
chr12:28262843-28342084:-
Coord C1 exon
chr12:28341971-28342084
Coord A exon
chr12:28334039-28334193
Coord C2 exon
chr12:28262843-28266242
Length
155 bp
Sequences
Splice sites
3' ss Seq
ACCCTTTCTCTCTCTTTCAGGTG
3' ss Score
15.59
5' ss Seq
AAGGTAACA
5' ss Score
8.92
Exon sequences
Seq C1 exon
ATCAATCGCTTCAATAAAGCAGAAGACCGAGCGCTGCTCATCACTGATCGCCATCTCTACAAAATGGATCCCCTTAAGCAATACAAGCCCATGAAGAGCATCCCACTCTATAAT
Seq A exon
GTGACCGGAGTGAGCATTTCCCCTGGGAAGGACCAGCTGGTCGTCTTCCATACCAAAGACAACCGGGACCTGATCGTGTGCCTGCAGGGCATGGTGCCAGCGGGAGACAGCCGCATCGGAGAGCTGGTCGGGACCCTGCTTAGCCACTTTAAAAG
Seq C2 exon
TGAGAAGAGGAAGCTACAGGTGAACACTGTGAGCCCCATTCACTGCAGTATGAATGGAAGGAAGTGCACTGTGGTCGTGGAAACCAAGATCAGCCAATCACAGCCAGACTTCACCAAAAGCCGATCGGGATACATTCTCTCGGTGCCAGGCAACTAGAGGACCAGGATCCCATTTTCCAGGACATTTACAGCTGGGTAGTCAAAATGAAGCCATACCAAATTTGCCTGATTACAGGGCAAGGAGGAACGTTTAATTTAGAGAAGTTTGTCCCTGAATTCCAAACTTTAGCTTTGATTATTTACAACGTGACAAGGTGGTATTAGGATAGATTTACCTGACTCGATTCTATTTATTAAACATCACAACCAAATGAAGGGTGATCATGAATGTAATGTTTATGATTAACAGGATATGCAGAGTTTTTAAAGTATCCAACTTGAGATTCAAAGGGAATATATTGGTTTTTGATCACCGCTTCATGTGGGATGAAAAATAGCTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000036863-'20-24,'20-20,21-24
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF060178=Myosin_TH1=FE(18.3=100)
A:
PF060178=Myosin_TH1=FE(25.2=100)
C2:
PF060178=Myosin_TH1=PD(24.8=94.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATAAAGCAGAAGACCGAGCGC
R:
GCACCGAGAGAATGTATCCCG
Band lengths:
247-402
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]