BtaEX0023580 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003763 | MYO5C
Description
myosin VC [Source:HGNC Symbol;Acc:HGNC:7604]
Coordinates
chr10:58192409-58194904:+
Coord C1 exon
chr10:58192409-58192552
Coord A exon
chr10:58193256-58193337
Coord C2 exon
chr10:58194797-58194904
Length
82 bp
Sequences
Splice sites
3' ss Seq
GATTCCTCTTTATTTTACAGTCA
3' ss Score
8.52
5' ss Seq
TAGGTACGT
5' ss Score
8.17
Exon sequences
Seq C1 exon
GCTGTTGGAAATGCCAAGACCACCCGCAATGACAACAGCAGTCGGTTTGGGAAATACACGGAAATTAGTTTTGATGAGAGAAATCAAATTATAGGAGCGAACATGAGAACTTACCTGCTAGAGAAATCCAGAGTTGTCTTTCAA
Seq A exon
TCAGAAAATGAACGAAATTACCACATTTTCTATCAGCTTTGTGCATCCGCAGAGCAGTCGGAATTTAAACATCTTAAATTAG
Seq C2 exon
GGAGTGCAGAAGAATTTAATTATACGCGAATGGGGGGCAGCACGGTCCTTGAGGGTGTGAATGACAGAGCCGACATGATAGAGACTCAGAAGACCTTCACACTGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003763_MULTIEX1-5/27=4-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.312 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(7.0=100)
A:
PF0006316=Myosin_head=FE(4.0=100)
C2:
PF0006316=Myosin_head=FE(5.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACAGCAGTCGGTTTGGGAAA
R:
CATTCACACCCTCAAGGACCG
Band lengths:
174-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development