GgaEX0006321 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr10:10096411-10098125:+
Coord C1 exon
chr10:10096411-10096554
Coord A exon
chr10:10097431-10097512
Coord C2 exon
chr10:10098018-10098125
Length
82 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTTCTCATTTGCAGTCA
3' ss Score
11.07
5' ss Seq
TGGGTAGGT
5' ss Score
6.86
Exon sequences
Seq C1 exon
GCTGTTGGCAATGCAAAGACCACGCGGAATGATAACAGCAGTCGGTTTGGAAAATACACTGAAATCAGCTTTGATCAGAGGTATCGAATCATTGGAGCCAACATGAGAACGTATCTGCTTGAGAAATCCAGAGTTGTCTTCCAG
Seq A exon
TCAGAAAATGAGAGGAATTACCATATATTTTATCAGCTGTGTGCATCTGCTATGCAGCCTGAATTCAAGCATCTTAAGTTGG
Seq C2 exon
GAAGCGCGGAAGAATTTAACTACACGAGAATGGGAGGCAGTACGACTATTGAAGGAGTTGATGACAGAGCAAATATGATTGAGACTCAGAAGACATTTGCCTTACTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004641-'7-7,'7-6,8-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.219 A=0.000 C2=0.027
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(22.4=100)
A:
PF0006316=Myosin_head=FE(12.9=100)
C2:
PF0006316=Myosin_head=FE(5.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGGCAATGCAAAGACCACG
R:
TGCCTCCCATTCTCGTGTAGT
Band lengths:
180-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]