HsaEX0041219 @ hg19
Exon Skipping
Gene
ENSG00000128833 | MYO5C
Description
myosin VC [Source:HGNC Symbol;Acc:7604]
Coordinates
chr15:52561950-52564920:-
Coord C1 exon
chr15:52564777-52564920
Coord A exon
chr15:52563960-52564041
Coord C2 exon
chr15:52561950-52562057
Length
82 bp
Sequences
Splice sites
3' ss Seq
GACATTTCTTTATCTTACAGTCG
3' ss Score
9.1
5' ss Seq
TGGGTATGT
5' ss Score
7.43
Exon sequences
Seq C1 exon
GCCGTTGGAAATGCCAAGACCACCCGCAATGACAATAGTAGTCGGTTTGGGAAATACACAGAAATCAGTTTTGATGAACAAAATCAAATTATAGGAGCCAACATGAGCACTTACCTCCTGGAGAAATCCAGAGTTGTCTTTCAA
Seq A exon
TCGGAAAATGAACGAAATTACCACATTTTCTATCAGCTTTGTGCATCTGCACAGCAGTCGGAATTTAAACATCTTAAATTGG
Seq C2 exon
GGAGTGCCGAAGAATTTAATTATACAAGAATGGGAGGCAATACTGTCATTGAGGGTGTGAATGATCGAGCTGAAATGGTAGAGACTCAAAAGACCTTCACGCTTCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000128833_CASSETTE8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.286 A=0.000 C2=0.054
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(16.4=100)
A:
PF0006316=Myosin_head=FE(10.9=100)
C2:
PF0006316=Myosin_head=FE(12.6=100),PF114633=R-HINP1I=PU(12.8=43.2)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGACCACCCGCAATGACAAT
R:
CCTCAATGACAGTATTGCCTCCC
Band lengths:
183-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)