DreEX6100645 @ danRer10
Exon Skipping
Gene
ENSDARG00000104235 | myo5c
Description
myosin VC [Source:ZFIN;Acc:ZDB-GENE-131127-196]
Coordinates
chr25:4666330-4667847:+
Coord C1 exon
chr25:4666330-4666473
Coord A exon
chr25:4666548-4666629
Coord C2 exon
chr25:4667740-4667847
Length
82 bp
Sequences
Splice sites
3' ss Seq
CTCGTTTGTTCTCCCTGCAGTCG
3' ss Score
9.83
5' ss Seq
TGTGTGAGT
5' ss Score
5.84
Exon sequences
Seq C1 exon
GCCATTGGAAATGCAAAAACAACCCGAAATGACAACAGCAGTCGATTTGGAAAGTACACTGAGATCAGTTTCGATAAAAGATACCAAATCATTGGTGCCAACATGAGGACGTATCTTCTGGAAAAGTCCAGGGTGGTGTTTCAG
Seq A exon
TCGGAGAACGAGAGAAATTATCACATCTTCTACCAAATGTGTGCTTGTGCAAATCAGCCGGAGTTCAAAGGCTTACGACTGT
Seq C2 exon
TGGGCGCAGAAAAGTTTAATTACACACGTTTGGGTGGTGAGATCGAGATCGAAGGTGTGGACGACCGTGCTGATATGGCAGAAACACGCAGAACCTTCAATCTACTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000104235-'5-9,'5-8,6-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.188 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(7.0=100)
A:
PF0006316=Myosin_head=FE(4.0=100)
C2:
PF0006316=Myosin_head=FE(5.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCGAAATGACAACAGCAGT
R:
CTCGATCTCACCACCCAAACG
Band lengths:
170-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]