HsaEX0041219 @ hg38
Exon Skipping
Gene
ENSG00000128833 | MYO5C
Description
myosin VC [Source:HGNC Symbol;Acc:HGNC:7604]
Coordinates
chr15:52269753-52272723:-
Coord C1 exon
chr15:52272580-52272723
Coord A exon
chr15:52271763-52271844
Coord C2 exon
chr15:52269753-52269860
Length
82 bp
Sequences
Splice sites
3' ss Seq
GACATTTCTTTATCTTACAGTCG
3' ss Score
9.1
5' ss Seq
TGGGTATGT
5' ss Score
7.43
Exon sequences
Seq C1 exon
GCCGTTGGAAATGCCAAGACCACCCGCAATGACAATAGTAGTCGGTTTGGGAAATACACAGAAATCAGTTTTGATGAACAAAATCAAATTATAGGAGCCAACATGAGCACTTACCTCCTGGAGAAATCCAGAGTTGTCTTTCAA
Seq A exon
TCGGAAAATGAACGAAATTACCACATTTTCTATCAGCTTTGTGCATCTGCACAGCAGTCGGAATTTAAACATCTTAAATTGG
Seq C2 exon
GGAGTGCCGAAGAATTTAATTATACAAGAATGGGAGGCAATACTGTCATTGAGGGTGTGAATGATCGAGCTGAAATGGTAGAGACTCAAAAGACCTTCACGCTTCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000128833_MULTIEX3-1/3=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.316 A=0.000 C2=0.034
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(13.1=100)
A:
PF0006316=Myosin_head=FE(4.0=100)
C2:
PF0006316=Myosin_head=FE(10.0=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGACCACCCGCAATGACAAT
R:
CCTCAATGACAGTATTGCCTCCC
Band lengths:
183-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development