GgaEX0006321 @ galGal4
Exon Skipping
Gene
ENSGALG00000004641 | MYO5C
Description
myosin VC [Source:HGNC Symbol;Acc:HGNC:7604]
Coordinates
chr10:8339629-8341333:+
Coord C1 exon
chr10:8339629-8339772
Coord A exon
chr10:8340639-8340720
Coord C2 exon
chr10:8341226-8341333
Length
82 bp
Sequences
Splice sites
3' ss Seq
GTTTCTTTTCTCATTTACAGTCA
3' ss Score
9.86
5' ss Seq
TGGGTAGGT
5' ss Score
6.86
Exon sequences
Seq C1 exon
GCTGTTGGCAATGCAAAGACCACGCGGAATGATAACAGCAGTCGGTTTGGAAAATACACTGAAATCAGCTTTGATCAGAGGTATCGAATCATTGGAGCCAACATGAGAACGTATCTGCTTGAGAAATCCAGAGTTGTCTTCCAG
Seq A exon
TCAGAGAATGAGAGGAATTACCATATATTTTATCAGCTGTGTGCATCTGCTATGCAGCCTGAATTCAAGCATCTTAAGTTGG
Seq C2 exon
GAAGCGCGGAAGAATTTAACTACACGAGAATGGGAGGCAGTACGACTATTGAAGGAGTTGATGACAGAGCAAATATGATTGAGACTCAGAAGACATTTGCCTTACTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004641-'9-6,'9-5,10-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.229 A=0.000 C2=0.027
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(7.0=100)
A:
PF0006316=Myosin_head=FE(4.0=100)
C2:
PF0006316=Myosin_head=FE(5.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGGCAATGCAAAGACCACG
R:
TGCCTCCCATTCTCGTGTAGT
Band lengths:
180-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]