BtaEX0023595 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003955 | MYO7A
Description
myosin VIIA [Source:HGNC Symbol;Acc:HGNC:7606]
Coordinates
chr15:57332143-57346790:+
Coord C1 exon
chr15:57332143-57332271
Coord A exon
chr15:57336348-57336500
Coord C2 exon
chr15:57346606-57346790
Length
153 bp
Sequences
Splice sites
3' ss Seq
GCCACTGGGCATCTCCGCAGGAA
3' ss Score
6.64
5' ss Seq
TACGTGAGT
5' ss Score
7.77
Exon sequences
Seq C1 exon
CTCTCTCACCCACAGGGCGACTACGTCTGGATGGACCTGAGATCCGGACAGGAGTTTGATGTGCCCATTGGAGCGGTGGTGAAGCTCTGTGATTCTGGGCAGATCCAGGTGGTGGACGATGAAGGCAAT
Seq A exon
GAACACTGGATTTCCCCGCAGAACGCCACGCACATCAAGCCCATGCACCCCACTTCAGTCCACGGCGTGGAGGACATGATCCGCTTGGGGGACCTCAATGAAGCCGGCATCCTGCGCAACCTGCTCATTAGATACCGAGACCATCTCATCTAC
Seq C2 exon
ACCTACACGGGCTCCATCTTGGTGGCTGTGAACCCCTACCAGCTGCTCTCTATCTACTCGCCAGAACACATCCGCCAGTATACCAACAAGAAGATTGGGGAGATGCCCCCCCACATCTTTGCCATTGCTGACAATTGCTACTTCAATATGAAGCGCAACAGCCGTGACCAGTGCTGCATCATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003955-'2-4,'2-2,3-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.023 A=0.137 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0006316=Myosin_head=PU(4.2=54.9)
C2:
PF0006316=Myosin_head=FE(9.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACAGGAGTTTGATGTGCCC
R:
CGGCTGTTGCGCTTCATATTG
Band lengths:
248-401
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development